Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 715 0.0
seq49208 302 1e-79
seq1395112 295 2e-77
seq78015 259 2e-66
seq44269 228 3e-57
seq276399 226 9e-57
seq673107 214 6e-53
seq1582902 188 2e-45
seq1655740 149 2e-33
seq703239 140 1e-30
seq1083375 132 2e-28
seq212974 129 2e-27
seq612638 127 7e-27
seq590790 109 2e-21
seq902113 96.9 1e-17
seq48851 89.7 2e-15
seq2027166 80.6 9e-13
>seq72279
Length=5110
Score = 715 bits (792), Expect = 0.0
Identities = 482/535 (90%), Gaps = 8/535 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 4590 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 4531
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4530 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 4471
Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181
|||||| || || |||| |||| || || || | | || | ||||| |
Sbjct 4470 GGCCCGATAAAACCGGGCCTTGGAGCCAAAAGGAGG--GGACATGCCCCGCTTCCGACCC 4413
Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCC 240
| || ||||||||| |||| ||| |||||||||||||||||||||| | || ||||||
Sbjct 4412 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGTAAGGGCTCC 4353
Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4352 CACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 4293
Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4292 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG 4233
Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4232 TAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 4173
Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4172 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 4113
Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4112 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 4058
>seq49208
Length=220
Score = 302 bits (334), Expect = 1e-79
Identities = 201/223 (90%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 131 CGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAA 190
||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| |||
Sbjct 1 CGCGAAGGACCTTAACGCCAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGAATAA 60
Query 191 GTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCT 250
||||||||||||||| ||||||||||||||||| |||||| | |||||||| ||||||
Sbjct 61 GTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTATTCT 117
Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310
||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 118 ACACCCCATATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 177
Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||||||||| |||| |||||||||| |||||||||||||||
Sbjct 178 CCCGCTGATTCTGCCAGGCCCGTTCCCCTGGCTGTGGTTTCGC 220
>seq1395112
Length=253
Score = 295 bits (326), Expect = 2e-77
Identities = 214/252 (85%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 208 GTAGTGGTATTTCACTTGCGCC-GAAACGGCTCCCACTTATTCTACACCTCTCAAGTCAT 266
|||||||||||||||||||||| | || ||||||||| || ||| ||||||||||||||
Sbjct 2 GTAGTGGTATTTCACTTGCGCCCGTAAGAGCTCCCACTCATCCTAGACCTCTCAAGTCAT 61
Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326
||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 62 TTCACAAAGTCGGGCTAGAGTTAAGCTCAACAGGGTCTTCTTTCCGTGCTGATTCCACCT 121
Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386
||||| ||||||||| | | |||||||| |||||| || | |||||||||||||||||||
Sbjct 122 AGCCCATTCCCTTGGTTATAGTTTCGCTGGATAGTCGACATGGACAGTGGGAATCTCGTT 181
Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AANNNNNNNNNNNNNNNNNCTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 241
Query 447 TAGTTACTCCCG 458
||||||||||||
Sbjct 242 TAGTTACTCCCG 253
>seq78015
Length=3147
Score = 259 bits (286), Expect = 2e-66
Identities = 195/234 (83%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
||||||||||| ||||||||| |||| ||||||||||||| |||| ||||||| ||||||
Sbjct 1869 TCTTCTTTCCCTGCTGATTCCACCAAACCCGTTCCCTTGGTTGTGATTTCGCTGGATAGT 1810
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||| |||||||||||||||| ||||||||| ||||| |||
Sbjct 1809 AGACAGGNNNNNNNNNNNNNNNNNTAATCCATTCATGCGCATCACTAATTGGATGAGGAG 1750
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||| || || ||||||| |||||||| |||||
Sbjct 1749 GCATTTGGCTACCTTAAGAGAGTCATAGTTA-TCTCGTCGTTTACGCGCGCTTGATTGAA 1691
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||| ||||||| |||||| | ||||||||||||| |||| ||||
Sbjct 1690 TTTCTTCACTTTAACATTCAAAGCACTAGCGAGAAATCACATTGTGTCAGCATC 1637
>seq44269
Length=487
Score = 228 bits (252), Expect = 3e-57
Identities = 164/194 (85%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
||||| ||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||
Sbjct 294 CCCACCTATCCTACACCTCTCAAGTCAATTCACAAAGTCGCACTAGAGTCAATCTCAACA 353
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358
|||||||||||||||| | ||| |||||||| ||||||||||||| |||||||||| |
Sbjct 354 GGGTCTTCTTTCCCCGGTTATTTCGCCAAGCACGTTCCCTTGGCTATGGTTTCGCTGGNN 413
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
|||||||||||||||||| ||||||| ||||||| ||||||||| ||
Sbjct 414 NNNNNNNNNNNNNAGTGGGAATCTCGTTAATTCATTCATTCGCGTCAATAATTAGATAAC 473
Query 419 GAGGCATTTGGCTA 432
||||||||||||||
Sbjct 474 GAGGCATTTGGCTA 487
>seq276399
Length=575
Score = 226 bits (250), Expect = 9e-57
Identities = 143/155 (92%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 575 TCTCGTTAATCCATTGATGCGCGTCAATAATTAGATGACGAGGCATTTGGCTACCTTAAG 516
Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499
|||||||||||||||||||||||||| || ||||| | |||||||||| |||||||||||
Sbjct 515 AGAGTCATAGTTACTCCCGCCGTTTAACCACGCTTAGATGAATTTCTTTACTTTGACATT 456
Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
|||| |||| ||||||||||||||||| | | |||
Sbjct 455 CAGAACACTCGGCAGAAATCACATTGCATGAGCAT 421
>seq673107
Length=233
Score = 214 bits (236), Expect = 6e-53
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 174
Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 173 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTGAGAGCAATAGGCAGAAATCACATTG 114
Query 526 CGTCAACA 533
||||| ||
Sbjct 113 CGTCAGCA 106
>seq1582902
Length=316
Score = 188 bits (208), Expect = 2e-45
Identities = 119/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 316 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGNNNCATAGTTACTCCCGCCGTTTA 257
Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525
|| || ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 256 CCTGCTCTTGGTTTAATTTCTTCACTTTGACATTCAGGGCAATGGGTAGAAATCACATTG 197
Query 526 CGTCAACATC 535
|||| ||||
Sbjct 196 CGTCGGCATC 187
>seq1655740
Length=463
Score = 149 bits (164), Expect = 2e-33
Identities = 99/112 (88%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 463 ATTTGGCTACCTTAAGAG--TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTNNNNN 406
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 405 NNNTCACTTTGACATTCAGAGCACTGGTCCGAAATCACATTGCGTCAGCATC 354
>seq703239
Length=235
Score = 140 bits (154), Expect = 1e-30
Identities = 97/110 (88%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||| ||||||| |||| | |||||||||||||||||||
Sbjct 112 CTTTTGTTCCACACGAGATTTATGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 53
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 52 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTC 3
>seq1083375
Length=207
Score = 132 bits (146), Expect = 2e-28
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 207 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTCACATTTAGAGCACTAGGC 148
Query 513 AGAAATCACATTGCGTCAACATC 535
|||||||||||||||||| ||||
Sbjct 147 AGAAATCACATTGCGTCAGCATC 125
>seq212974
Length=233
Score = 129 bits (142), Expect = 2e-27
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||| |||||| |||| | |||||||| ||||||||||
Sbjct 159 CTTTTGTTCCACACGAGATTTGTGTTCTTGTTGAGCTCATCTTAGGACCCCTGCGTTATC 100
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||| |||||| ||||||| ||||||||||||||| | ||||||||
Sbjct 99 TTTTAACAGATGTGCTGCCCCAACCAAACTGCCCACCTGACAATGTATTTCTCCCGGATC 40
Query 127 GGCCCG 132
||||||
Sbjct 39 GGCCCG 34
>seq612638
Length=235
Score = 127 bits (140), Expect = 7e-27
Identities = 94/110 (85%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| | | |||||||||| |||| |||| | |||||||||||||||||||
Sbjct 112 CTTTTGTTTCATTGGAGATTTCTTTTCTTGTTGAGCTCATCTTAGGACACCTGCGTTATC 53
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 52 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTC 3
>seq590790
Length=209
Score = 109 bits (120), Expect = 2e-21
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 75 GATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG-C 133
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 GATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAT 60
Query 134 GAAGGACCTTAACGCCAGAAAATGGTCG-GTGAAGACCAG-TTCCGCTTCATTGATTAAG 191
|| ||| || | | | | || | ||| | ||| || ||||
Sbjct 61 AAANNNNNNNNNNNNNNNCAAAAGGAGGCGACATGCCCCGCTTCTGACCCATGGAATAAG 120
Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCT 250
||||| |||| |||||| ||| || ||||||||||||| ||
Sbjct 121 TAAAATAACGTNNNNNNNNNNNNNNNNNNNCTTGCGCCCGTAAGGGCTCCCACTTATCCT 180
Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGG 279
|||||||||||||||||||||||||||||
Sbjct 181 ACACCTCTCAAGTCATTTCACAAAGTCGG 209
>seq902113
Length=1366
Score = 96.9 bits (106), Expect = 1e-17
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 10 TTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTT 69
||| |||||| ||| |||| ||||| ||| | |||||||||||||||||| ||
Sbjct 1276 TTGTTCTACACAAGAGTTCTTTTCTCGTGGAGCTCATGTTAGGACACCTGCGTTATCTTT 1335
Query 70 TAACAGATGTGCCGCCCCAGCCAAACTCCCC 100
|||||||||||||||||||||||||||||||
Sbjct 1336 TAACAGATGTGCCGCCCCAGCCAAACTCCCC 1366
>seq48851
Length=292
Score = 89.7 bits (98), Expect = 2e-15
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294
||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 231 GGCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAAAGTCAGACTAGAGTCAAGCTC 290
Query 295 AA 296
||
Sbjct 291 AA 292
>seq2027166
Length=333
Score = 80.6 bits (88), Expect = 9e-13
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 31 TTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGC 90
||||| |||| | || |||||||||||||| | ||||||| |||||||||||||||
Sbjct 227 TTCTCGTTGAGCTCATCTCAGGACACCTGCGTTCTCTTTTAACAAATGTGCCGCCCCAGC 286
Query 91 CAAACTCCCCACCT 104
|||||||||||||
Sbjct 287 TAAACTCCCCACCT 300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1601222162848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |