Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq72279 715 0.0 seq49208 302 1e-79 seq1395112 295 2e-77 seq78015 259 2e-66 seq44269 228 3e-57 seq276399 226 9e-57 seq673107 214 6e-53 seq1582902 188 2e-45 seq1655740 149 2e-33 seq703239 140 1e-30 seq1083375 132 2e-28 seq212974 129 2e-27 seq612638 127 7e-27 seq590790 109 2e-21 seq902113 96.9 1e-17 seq48851 89.7 2e-15 seq2027166 80.6 9e-13 >seq72279 Length=5110 Score = 715 bits (792), Expect = 0.0 Identities = 482/535 (90%), Gaps = 8/535 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 4590 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 4531 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4530 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 4471 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| || || |||| |||| || || || | | || | ||||| | Sbjct 4470 GGCCCGATAAAACCGGGCCTTGGAGCCAAAAGGAGG--GGACATGCCCCGCTTCCGACCC 4413 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCC 240 | || ||||||||| |||| ||| |||||||||||||||||||||| | || |||||| Sbjct 4412 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGTAAGGGCTCC 4353 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4352 CACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 4293 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4292 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG 4233 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4232 TAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 4173 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4172 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 4113 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4112 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 4058 >seq49208 Length=220 Score = 302 bits (334), Expect = 1e-79 Identities = 201/223 (90%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 131 CGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAA 190 ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||| Sbjct 1 CGCGAAGGACCTTAACGCCAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGAATAA 60 Query 191 GTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCT 250 ||||||||||||||| ||||||||||||||||| |||||| | |||||||| |||||| Sbjct 61 GTAAAAAAACGATAAAGGTAGTGGTATTTCACTGGCGCCGGA---GCTCCCACCTATTCT 117 Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 ||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 118 ACACCCCATATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 177 Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||| |||| |||||||||| ||||||||||||||| Sbjct 178 CCCGCTGATTCTGCCAGGCCCGTTCCCCTGGCTGTGGTTTCGC 220 >seq1395112 Length=253 Score = 295 bits (326), Expect = 2e-77 Identities = 214/252 (85%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACTTGCGCC-GAAACGGCTCCCACTTATTCTACACCTCTCAAGTCAT 266 |||||||||||||||||||||| | || ||||||||| || ||| |||||||||||||| Sbjct 2 GTAGTGGTATTTCACTTGCGCCCGTAAGAGCTCCCACTCATCCTAGACCTCTCAAGTCAT 61 Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| || Sbjct 62 TTCACAAAGTCGGGCTAGAGTTAAGCTCAACAGGGTCTTCTTTCCGTGCTGATTCCACCT 121 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||| ||||||||| | | |||||||| |||||| || | ||||||||||||||||||| Sbjct 122 AGCCCATTCCCTTGGTTATAGTTTCGCTGGATAGTCGACATGGACAGTGGGAATCTCGTT 181 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 182 AANNNNNNNNNNNNNNNNNCTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 241 Query 447 TAGTTACTCCCG 458 |||||||||||| Sbjct 242 TAGTTACTCCCG 253 >seq78015 Length=3147 Score = 259 bits (286), Expect = 2e-66 Identities = 195/234 (83%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||| ||||||||| |||| ||||||||||||| |||| ||||||| |||||| Sbjct 1869 TCTTCTTTCCCTGCTGATTCCACCAAACCCGTTCCCTTGGTTGTGATTTCGCTGGATAGT 1810 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| ||| |||||||||||||||| ||||||||| ||||| ||| Sbjct 1809 AGACAGGNNNNNNNNNNNNNNNNNTAATCCATTCATGCGCATCACTAATTGGATGAGGAG 1750 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||| Sbjct 1749 GCATTTGGCTACCTTAAGAGAGTCATAGTTA-TCTCGTCGTTTACGCGCGCTTGATTGAA 1691 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||| ||||||| |||||| | ||||||||||||| |||| |||| Sbjct 1690 TTTCTTCACTTTAACATTCAAAGCACTAGCGAGAAATCACATTGTGTCAGCATC 1637 >seq44269 Length=487 Score = 228 bits (252), Expect = 3e-57 Identities = 164/194 (85%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||| ||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||| Sbjct 294 CCCACCTATCCTACACCTCTCAAGTCAATTCACAAAGTCGCACTAGAGTCAATCTCAACA 353 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||| | ||| |||||||| ||||||||||||| |||||||||| | Sbjct 354 GGGTCTTCTTTCCCCGGTTATTTCGCCAAGCACGTTCCCTTGGCTATGGTTTCGCTGGNN 413 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||||| ||||||| ||||||| ||||||||| || Sbjct 414 NNNNNNNNNNNNNAGTGGGAATCTCGTTAATTCATTCATTCGCGTCAATAATTAGATAAC 473 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 474 GAGGCATTTGGCTA 487 >seq276399 Length=575 Score = 226 bits (250), Expect = 9e-57 Identities = 143/155 (92%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 575 TCTCGTTAATCCATTGATGCGCGTCAATAATTAGATGACGAGGCATTTGGCTACCTTAAG 516 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||||||||||||| || ||||| | |||||||||| ||||||||||| Sbjct 515 AGAGTCATAGTTACTCCCGCCGTTTAACCACGCTTAGATGAATTTCTTTACTTTGACATT 456 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||| |||| ||||||||||||||||| | | ||| Sbjct 455 CAGAACACTCGGCAGAAATCACATTGCATGAGCAT 421 >seq673107 Length=233 Score = 214 bits (236), Expect = 6e-53 Identities = 124/128 (97%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 174 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| Sbjct 173 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTGAGAGCAATAGGCAGAAATCACATTG 114 Query 526 CGTCAACA 533 ||||| || Sbjct 113 CGTCAGCA 106 >seq1582902 Length=316 Score = 188 bits (208), Expect = 2e-45 Identities = 119/130 (92%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 316 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGNNNCATAGTTACTCCCGCCGTTTA 257 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || || ||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||| Sbjct 256 CCTGCTCTTGGTTTAATTTCTTCACTTTGACATTCAGGGCAATGGGTAGAAATCACATTG 197 Query 526 CGTCAACATC 535 |||| |||| Sbjct 196 CGTCGGCATC 187 >seq1655740 Length=463 Score = 149 bits (164), Expect = 2e-33 Identities = 99/112 (88%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 463 ATTTGGCTACCTTAAGAG--TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTNNNNN 406 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||| | ||||||||||||||||| |||| Sbjct 405 NNNTCACTTTGACATTCAGAGCACTGGTCCGAAATCACATTGCGTCAGCATC 354 >seq703239 Length=235 Score = 140 bits (154), Expect = 1e-30 Identities = 97/110 (88%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||| ||||||| |||| | ||||||||||||||||||| Sbjct 112 CTTTTGTTCCACACGAGATTTATGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 53 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 52 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTC 3 >seq1083375 Length=207 Score = 132 bits (146), Expect = 2e-28 Identities = 79/83 (95%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 207 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTCACATTTAGAGCACTAGGC 148 Query 513 AGAAATCACATTGCGTCAACATC 535 |||||||||||||||||| |||| Sbjct 147 AGAAATCACATTGCGTCAGCATC 125 >seq212974 Length=233 Score = 129 bits (142), Expect = 2e-27 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||| |||||| |||| | |||||||| |||||||||| Sbjct 159 CTTTTGTTCCACACGAGATTTGTGTTCTTGTTGAGCTCATCTTAGGACCCCTGCGTTATC 100 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||| |||||| ||||||| ||||||||||||||| | |||||||| Sbjct 99 TTTTAACAGATGTGCTGCCCCAACCAAACTGCCCACCTGACAATGTATTTCTCCCGGATC 40 Query 127 GGCCCG 132 |||||| Sbjct 39 GGCCCG 34 >seq612638 Length=235 Score = 127 bits (140), Expect = 7e-27 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| | | |||||||||| |||| |||| | ||||||||||||||||||| Sbjct 112 CTTTTGTTTCATTGGAGATTTCTTTTCTTGTTGAGCTCATCTTAGGACACCTGCGTTATC 53 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 52 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTC 3 >seq590790 Length=209 Score = 109 bits (120), Expect = 2e-21 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 75 GATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG-C 133 ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1 GATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAT 60 Query 134 GAAGGACCTTAACGCCAGAAAATGGTCG-GTGAAGACCAG-TTCCGCTTCATTGATTAAG 191 || ||| || | | | | || | ||| | ||| || |||| Sbjct 61 AAANNNNNNNNNNNNNNNCAAAAGGAGGCGACATGCCCCGCTTCTGACCCATGGAATAAG 120 Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCT 250 ||||| |||| |||||| ||| || ||||||||||||| || Sbjct 121 TAAAATAACGTNNNNNNNNNNNNNNNNNNNCTTGCGCCCGTAAGGGCTCCCACTTATCCT 180 Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGG 279 ||||||||||||||||||||||||||||| Sbjct 181 ACACCTCTCAAGTCATTTCACAAAGTCGG 209 >seq902113 Length=1366 Score = 96.9 bits (106), Expect = 1e-17 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 10 TTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTT 69 ||| |||||| ||| |||| ||||| ||| | |||||||||||||||||| || Sbjct 1276 TTGTTCTACACAAGAGTTCTTTTCTCGTGGAGCTCATGTTAGGACACCTGCGTTATCTTT 1335 Query 70 TAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 ||||||||||||||||||||||||||||||| Sbjct 1336 TAACAGATGTGCCGCCCCAGCCAAACTCCCC 1366 >seq48851 Length=292 Score = 89.7 bits (98), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||| Sbjct 231 GGCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAAAGTCAGACTAGAGTCAAGCTC 290 Query 295 AA 296 || Sbjct 291 AA 292 >seq2027166 Length=333 Score = 80.6 bits (88), Expect = 9e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 31 TTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGC 90 ||||| |||| | || |||||||||||||| | ||||||| ||||||||||||||| Sbjct 227 TTCTCGTTGAGCTCATCTCAGGACACCTGCGTTCTCTTTTAACAAATGTGCCGCCCCAGC 286 Query 91 CAAACTCCCCACCT 104 ||||||||||||| Sbjct 287 TAAACTCCCCACCT 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1601222162848