Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq829722 313 7e-83 seq385644 304 4e-80 seq1625453 277 5e-72 seq995627 271 2e-70 seq35278 250 7e-64 seq270219 244 3e-62 seq1947187 232 2e-58 seq882714 221 4e-55 seq282816 147 6e-33 seq16614 134 4e-29 seq39625 131 5e-28 seq761528 98.7 3e-18 seq2049377 91.5 4e-16 seq2022454 89.7 2e-15 seq23495 89.7 2e-15 seq749210 84.2 6e-14 seq2045901 80.6 8e-13 seq1335577 78.8 3e-12 >seq829722 Length=223 Score = 313 bits (346), Expect = 7e-83 Identities = 200/218 (92%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 10 CCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTC 69 |||||||| |||| | || | |||| |||| ||||||||||||||||||||||||||| Sbjct 1 CCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTC 60 Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 AGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGATTCTCAGGCT 120 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||| Sbjct 121 CCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTAT 180 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||||||||||||||||||||||||||||||||||| Sbjct 181 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 218 >seq385644 Length=341 Score = 304 bits (336), Expect = 4e-80 Identities = 258/310 (83%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 204 TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAG 262 |||||||||||||||||||||||| | |||||||| ||| ||||||||||| ||| || Sbjct 1 TTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCATGCGATCCGTCGAG 60 Query 263 TTATTATGAATCACCAAGGAGCCCCGA--AGGGC----GTTGGTTTTTTATCTAATAAAT 316 |||| |||||||| | ||| | ||| || || || | ||||||||||||||| Sbjct 61 TTATCATGAATCATC--GGATCAGCGAGCAGAGCCCACGTCAGCCTTTTATCTAATAAAT 118 Query 317 ACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375 | ||||| || || |||||||||| | ||| ||||||||||||||||||| |||||||| Sbjct 119 GCGCCCCTCCCAAAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTAT 178 Query 376 CCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 || |||| | | ||| |||||| |||| ||||||||||||||||||||||||||||||| Sbjct 179 CCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTC 237 Query 436 ACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 || || | |||| || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 238 ACAGTTCAAATTGGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGA 297 Query 495 CTACTGGCAG 504 ||||| |||| Sbjct 298 CTACTAGCAG 307 >seq1625453 Length=269 Score = 277 bits (306), Expect = 5e-72 Identities = 192/218 (88%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 10 CCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTC 69 |||||||| |||| | || | |||| |||| ||||||||||||||||||||||||||| Sbjct 269 CCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTC 210 Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 AGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 150 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||||||| ||||| ||||||||| | | || |||| | ||||||||||| | |||| Sbjct 149 CCCTCTCCAGAATCAAACCCTAATACTCTGTCACCCTTCACCACCATGGTAGGACCCTAT 90 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||||||| ||| ||||||||| |||||||||||||| Sbjct 89 CCTACCATCAAAACTTGATAGGGTAGAAATTTGAATGA 52 >seq995627 Length=267 Score = 271 bits (300), Expect = 2e-70 Identities = 222/266 (83%), Gaps = 9/266 (3%) Strand=Plus/Minus Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 267 CCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 208 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||| |||| ||| |||| || |||| |||||| |||| Sbjct 207 GTTTCTCAGGCTCCCTCTCCGAAATCAAACTCTAAATCTCCGTCACCCGTCACCACCACT 148 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| | Sbjct 147 GTAGGCCCCTATCCTACCATCAAAAGTTGATAGGGCAGAAATTTGAATGATGTGTCGCAG 88 Query 238 GC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGC 294 || ||||||||||||| | || |||||| |||||||| | ||| | ||| || || Sbjct 87 GCAAAAAGGCCATGCGATCCATTGAGTTATCATGAATCATC--GGATCAACGAGCAGAGC 30 Query 295 ----GTTGGTTTTTTATCTAATAAAT 316 || | ||||||||||||||| Sbjct 29 CTGTGTCAGCCTTTTATCTAATAAAT 4 >seq35278 Length=345 Score = 250 bits (276), Expect = 7e-64 Identities = 199/237 (84%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGT-ATTTATTGTCACTACC 59 |||| ||||||| |||| |||| | || | |||| || | || |||||||||||||||| Sbjct 23 GTACACATTCCAGTTACCAGACACTAATGTGCCCGGTC-CTGTCATTTATTGTCACTACC 81 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| ||||| ||||||| |||||||| |||| | ||||||||||||||||||||||| | Sbjct 82 TCCTTGTGTCAGGATTGGTTAATTTGCACGCCCGTTGCCTTCCTTGGATGTGGTAGCCTT 141 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||| |||||||||||||||||| |||| |||| | |||| ||| Sbjct 142 TTCTCACGCTCCCTCTCTGGAATCGAACCCTAATTCTCCGTCACCCATCACCACCAAGGT 201 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 ||||| ||||| ||||||| |||||||| | ||||||||||||||||| | ||||| Sbjct 202 AGGCCCCTATCTTACCATCAAAAGTTGACATGGCAGAAATTTGAATGACGCGTCGCC 258 >seq270219 Length=623 Score = 244 bits (270), Expect = 3e-62 Identities = 255/335 (76%), Gaps = 8/335 (2%) Strand=Plus/Plus Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1 GGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCC 60 Query 237 GGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGG-- 292 | | ||| || |||||||| ||| |||||| |||||||| || | ||| || | Sbjct 61 GACACAAAGGACATGCGATCCGTCGAGTTATAATGAATCATCAGATCAGCGAGCAAAGCC 120 Query 293 -GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTA 350 |||| | || |||||||||||| ||||| || || ||||||| Sbjct 121 CGCGTCAGCCTTATATCTAATAAATGTGCCCCTCCCAAAAGTCGGGGNNNNNNNNNNNNN 180 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||| || ||||||| |||| | | ||| ||||| || |||||| Sbjct 181 NNNNNNNNNGAATTACTACAGTTATCCGAGTAGCATG-TACCGTCAAACAATTTATAACT 239 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGG 469 |||||||||||||||||||||||||| ||| | ||| || |||||| |||||||||| Sbjct 240 GATTTAATGAGCCATTCGCAGTTTCATAGTACAATTTGGTTCATACTTGCACATGCATGG 299 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| |||| Sbjct 300 CTTAATCTTTGAGACAAGCATATGACTACTAGCAG 334 >seq1947187 Length=212 Score = 232 bits (256), Expect = 2e-58 Identities = 167/197 (85%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 31 GCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGC 90 |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 203 GCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC 144 Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| Sbjct 143 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTTCCTCTCCCGAAACGAACCCT 84 Query 151 AATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAG 210 ||||| || | |||||| | ||||||||||||||||||||| || Sbjct 83 AATTCTCCATCACCCGTCACNNNNNNNNNNNNNCCCTATCCTACCATCGAAAGTTGGTAA 24 Query 211 GGCAGAAATTTGAATGA 227 ||||||||||||||||| Sbjct 23 GGCAGAAATTTGAATGA 7 >seq882714 Length=3199 Score = 221 bits (244), Expect = 4e-55 Identities = 174/205 (85%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 301 TTTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 |||||||||||||||||| |||| ||| ||||| |||||| | ||| |||||||||||| Sbjct 37 TTTTTATCTAATAAATACGACCCTCCCGGAAGTCAGGGTTTGTTGCACGTATTAGCTCTA 96 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||| ||| ||| || |||| | | ||| |||||| |||| ||||||||||||||| Sbjct 97 GAATTACTACGATTAACCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATG 155 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTT 478 |||||||||||||||||| || | |||| || |||||| ||| ||||||||||||| Sbjct 156 AGCCATTCGCAGTTTCACNGTTCAAATTGGTTCATACTTGCACACATATGGCTTAATCTT 215 Query 479 TGAGACAAGCATATGACTACTGGCA 503 |||||||||||| |||||||||||| Sbjct 216 TGAGACAAGCATGTGACTACTGGCA 240 >seq282816 Length=339 Score = 147 bits (162), Expect = 6e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||| ||| |||| | || |||| |||| |||||||||||||||||| Sbjct 119 GTACTCATTCCAACTACCAGACACTAATATGCCCGGTATTGTTATTTATTGTCACTACCT 60 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 59 CCCCGTGTCAGGATCGGGTAATTTGCGCGCCTAATGCCTTCCTTGGATGTGGTAGCCGT 1 >seq16614 Length=4170 Score = 134 bits (148), Expect = 4e-29 Identities = 126/157 (80%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 |||||||||||||||| | | |||||||| |||| | | | | || ||| |||| |||| Sbjct 11 TATTAGCTCTAGAATTGCTATGGTTATCCGAGTAGCATG-TGCCATAAAA-AAACTATAA 68 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCAT 467 | |||||||||| |||||| |||||||| | | |||| || || || |||||||| Sbjct 69 CCAATTTAATGAGTCATTCGTAGTTTCACAATTCAAATTGGTTCATNNTTGCACATGCAT 128 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||| ||||||||||||||| |||||| Sbjct 129 GGCTTAATTTTTGATACAAGCATATGACTATTGGCAG 165 >seq39625 Length=239 Score = 131 bits (144), Expect = 5e-28 Identities = 172/233 (74%), Gaps = 18/233 (8%) Strand=Plus/Plus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-------ACCATGGTAGG 182 ||| | ||||||||||||||||| || | | |||||| | | ||||||||||| Sbjct 6 CCCCCCCCGGAATCGAACCCTAAGTCTACATCACCCGTCGCTCGTCACTACCATGGTAGG 65 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAA-ATTTGAATGAACCATCGCCGGCTC 241 || ||||||||| ||||||||||||||||| | || ||||||||| |||| |||| | Sbjct 66 CCCCTATCCTACGATCGAAAGTTGATAGGGAATAACTTTTGAATGATGCATCATCGGCAC 125 Query 242 -AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGG----C 294 ||||||||||||| | || ||| |||||| | | ||| | ||| || | | Sbjct 126 AAAGGCCATGCGATCTATCGAGCTATCATGAATGATC--GGATCAGCGAGCAGAGCCCTC 183 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCA 346 || | ||||||||||||||| | || | || ||||||||||||| | ||| Sbjct 184 GTGAGCCTTTTATCTAATAAATGCGCCACACCCAGAAGTCGGGGTTTGTTGCA 236 >seq761528 Length=220 Score = 98.7 bits (108), Expect = 3e-18 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 144 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 203 Query 61 CCCCGTGTCGGGATTGG 77 ||||||||||||||||| Sbjct 204 CCCCGTGTCGGGATTGG 220 >seq2049377 Length=411 Score = 91.5 bits (100), Expect = 4e-16 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 53 CACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112 |||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||| | Sbjct 88 CACTACCTCCCCGTGTAAGGATTGGG-AATTTGTGCGCCTGCTGCCTTCCTCTGATGTAG 30 Query 113 TAGCCGTTTCTCAGGCTCCC 132 || |||||||||| |||| Sbjct 29 TATTTGTTTCTCAGGATCCC 10 >seq2022454 Length=258 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| ||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 77 GTAGTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 18 Query 61 CCCCGTGTCGGGATTGG 77 ||||||||| ||||||| Sbjct 17 CCCCGTGTCAGGATTGG 1 >seq23495 Length=2470 Score = 89.7 bits (98), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 445 ATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 ATTGATTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1105 Query 504 G 504 | Sbjct 1106 G 1106 >seq749210 Length=212 Score = 84.2 bits (92), Expect = 6e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 144 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 203 Query 61 CCCCGTGTC 69 ||||||||| Sbjct 204 CCCCGTGTC 212 >seq2045901 Length=263 Score = 80.6 bits (88), Expect = 8e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| || | |||||||||||||||||| Sbjct 195 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTGTTGTTATTTATTGTCACTACCT 254 Query 61 CCCCGTGTC 69 ||||||||| Sbjct 255 CCCCGTGTC 263 >seq1335577 Length=210 Score = 78.8 bits (86), Expect = 3e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 67 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 8 Query 61 CCCCGT 66 |||||| Sbjct 7 CCCCGT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1479015383296