Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq829722 313 7e-83
seq385644 304 4e-80
seq1625453 277 5e-72
seq995627 271 2e-70
seq35278 250 7e-64
seq270219 244 3e-62
seq1947187 232 2e-58
seq882714 221 4e-55
seq282816 147 6e-33
seq16614 134 4e-29
seq39625 131 5e-28
seq761528 98.7 3e-18
seq2049377 91.5 4e-16
seq2022454 89.7 2e-15
seq23495 89.7 2e-15
seq749210 84.2 6e-14
seq2045901 80.6 8e-13
seq1335577 78.8 3e-12
>seq829722
Length=223
Score = 313 bits (346), Expect = 7e-83
Identities = 200/218 (92%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 10 CCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTC 69
|||||||| |||| | || | |||| |||| |||||||||||||||||||||||||||
Sbjct 1 CCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTC 60
Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGATTCTCAGGCT 120
Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189
|||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||
Sbjct 121 CCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTAT 180
Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227
||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 218
>seq385644
Length=341
Score = 304 bits (336), Expect = 4e-80
Identities = 258/310 (83%), Gaps = 12/310 (4%)
Strand=Plus/Plus
Query 204 TTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAG 262
|||||||||||||||||||||||| | |||||||| ||| ||||||||||| ||| ||
Sbjct 1 TTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACAAAGGCCATGCGATCCGTCGAG 60
Query 263 TTATTATGAATCACCAAGGAGCCCCGA--AGGGC----GTTGGTTTTTTATCTAATAAAT 316
|||| |||||||| | ||| | ||| || || || | |||||||||||||||
Sbjct 61 TTATCATGAATCATC--GGATCAGCGAGCAGAGCCCACGTCAGCCTTTTATCTAATAAAT 118
Query 317 ACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375
| ||||| || || |||||||||| | ||| ||||||||||||||||||| ||||||||
Sbjct 119 GCGCCCCTCCCAAAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTAT 178
Query 376 CCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435
|| |||| | | ||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 179 CCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTC 237
Query 436 ACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494
|| || | |||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 ACAGTTCAAATTGGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGA 297
Query 495 CTACTGGCAG 504
||||| ||||
Sbjct 298 CTACTAGCAG 307
>seq1625453
Length=269
Score = 277 bits (306), Expect = 5e-72
Identities = 192/218 (88%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 10 CCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTC 69
|||||||| |||| | || | |||| |||| |||||||||||||||||||||||||||
Sbjct 269 CCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTC 210
Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 150
Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189
|||||||| ||||| ||||||||| | | || |||| | ||||||||||| | ||||
Sbjct 149 CCCTCTCCAGAATCAAACCCTAATACTCTGTCACCCTTCACCACCATGGTAGGACCCTAT 90
Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227
||||||||| ||| ||||||||| ||||||||||||||
Sbjct 89 CCTACCATCAAAACTTGATAGGGTAGAAATTTGAATGA 52
>seq995627
Length=267
Score = 271 bits (300), Expect = 2e-70
Identities = 222/266 (83%), Gaps = 9/266 (3%)
Strand=Plus/Minus
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 CCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 208
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177
||||||||||||||||||||| |||| ||| |||| || |||| |||||| ||||
Sbjct 207 GTTTCTCAGGCTCCCTCTCCGAAATCAAACTCTAAATCTCCGTCACCCGTCACCACCACT 148
Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 147 GTAGGCCCCTATCCTACCATCAAAAGTTGATAGGGCAGAAATTTGAATGATGTGTCGCAG 88
Query 238 GC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGC 294
|| ||||||||||||| | || |||||| |||||||| | ||| | ||| || ||
Sbjct 87 GCAAAAAGGCCATGCGATCCATTGAGTTATCATGAATCATC--GGATCAACGAGCAGAGC 30
Query 295 ----GTTGGTTTTTTATCTAATAAAT 316
|| | |||||||||||||||
Sbjct 29 CTGTGTCAGCCTTTTATCTAATAAAT 4
>seq35278
Length=345
Score = 250 bits (276), Expect = 7e-64
Identities = 199/237 (84%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGT-ATTTATTGTCACTACC 59
|||| ||||||| |||| |||| | || | |||| || | || ||||||||||||||||
Sbjct 23 GTACACATTCCAGTTACCAGACACTAATGTGCCCGGTC-CTGTCATTTATTGTCACTACC 81
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||| ||||| ||||||| |||||||| |||| | ||||||||||||||||||||||| |
Sbjct 82 TCCTTGTGTCAGGATTGGTTAATTTGCACGCCCGTTGCCTTCCTTGGATGTGGTAGCCTT 141
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|||||| |||||||||| |||||||||||||||||| |||| |||| | |||| |||
Sbjct 142 TTCTCACGCTCCCTCTCTGGAATCGAACCCTAATTCTCCGTCACCCATCACCACCAAGGT 201
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236
||||| ||||| ||||||| |||||||| | ||||||||||||||||| | |||||
Sbjct 202 AGGCCCCTATCTTACCATCAAAAGTTGACATGGCAGAAATTTGAATGACGCGTCGCC 258
>seq270219
Length=623
Score = 244 bits (270), Expect = 3e-62
Identities = 255/335 (76%), Gaps = 8/335 (2%)
Strand=Plus/Plus
Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 GGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCC 60
Query 237 GGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGG-- 292
| | ||| || |||||||| ||| |||||| |||||||| || | ||| || |
Sbjct 61 GACACAAAGGACATGCGATCCGTCGAGTTATAATGAATCATCAGATCAGCGAGCAAAGCC 120
Query 293 -GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTA 350
|||| | || |||||||||||| ||||| || || |||||||
Sbjct 121 CGCGTCAGCCTTATATCTAATAAATGTGCCCCTCCCAAAAGTCGGGGNNNNNNNNNNNNN 180
Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410
||||||| || ||||||| |||| | | ||| ||||| || ||||||
Sbjct 181 NNNNNNNNNGAATTACTACAGTTATCCGAGTAGCATG-TACCGTCAAACAATTTATAACT 239
Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGG 469
|||||||||||||||||||||||||| ||| | ||| || |||||| ||||||||||
Sbjct 240 GATTTAATGAGCCATTCGCAGTTTCATAGTACAATTTGGTTCATACTTGCACATGCATGG 299
Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||| ||||
Sbjct 300 CTTAATCTTTGAGACAAGCATATGACTACTAGCAG 334
>seq1947187
Length=212
Score = 232 bits (256), Expect = 2e-58
Identities = 167/197 (85%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 31 GCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGC 90
|||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 203 GCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGC 144
Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 143 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTTCCTCTCCCGAAACGAACCCT 84
Query 151 AATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAG 210
||||| || | |||||| | ||||||||||||||||||||| ||
Sbjct 83 AATTCTCCATCACCCGTCACNNNNNNNNNNNNNCCCTATCCTACCATCGAAAGTTGGTAA 24
Query 211 GGCAGAAATTTGAATGA 227
|||||||||||||||||
Sbjct 23 GGCAGAAATTTGAATGA 7
>seq882714
Length=3199
Score = 221 bits (244), Expect = 4e-55
Identities = 174/205 (85%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 301 TTTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359
|||||||||||||||||| |||| ||| ||||| |||||| | ||| ||||||||||||
Sbjct 37 TTTTTATCTAATAAATACGACCCTCCCGGAAGTCAGGGTTTGTTGCACGTATTAGCTCTA 96
Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419
||||||| ||| ||| || |||| | | ||| |||||| |||| |||||||||||||||
Sbjct 97 GAATTACTACGATTAACCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATG 155
Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTT 478
|||||||||||||||||| || | |||| || |||||| ||| |||||||||||||
Sbjct 156 AGCCATTCGCAGTTTCACNGTTCAAATTGGTTCATACTTGCACACATATGGCTTAATCTT 215
Query 479 TGAGACAAGCATATGACTACTGGCA 503
|||||||||||| ||||||||||||
Sbjct 216 TGAGACAAGCATGTGACTACTGGCA 240
>seq282816
Length=339
Score = 147 bits (162), Expect = 6e-33
Identities = 104/119 (87%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||| ||| |||| | || |||| |||| ||||||||||||||||||
Sbjct 119 GTACTCATTCCAACTACCAGACACTAATATGCCCGGTATTGTTATTTATTGTCACTACCT 60
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 59 CCCCGTGTCAGGATCGGGTAATTTGCGCGCCTAATGCCTTCCTTGGATGTGGTAGCCGT 1
>seq16614
Length=4170
Score = 134 bits (148), Expect = 4e-29
Identities = 126/157 (80%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408
|||||||||||||||| | | |||||||| |||| | | | | || ||| |||| ||||
Sbjct 11 TATTAGCTCTAGAATTGCTATGGTTATCCGAGTAGCATG-TGCCATAAAA-AAACTATAA 68
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCAT 467
| |||||||||| |||||| |||||||| | | |||| || || || ||||||||
Sbjct 69 CCAATTTAATGAGTCATTCGTAGTTTCACAATTCAAATTGGTTCATNNTTGCACATGCAT 128
Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| ||||| ||||||||||||||| ||||||
Sbjct 129 GGCTTAATTTTTGATACAAGCATATGACTATTGGCAG 165
>seq39625
Length=239
Score = 131 bits (144), Expect = 5e-28
Identities = 172/233 (74%), Gaps = 18/233 (8%)
Strand=Plus/Plus
Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-------ACCATGGTAGG 182
||| | ||||||||||||||||| || | | |||||| | | |||||||||||
Sbjct 6 CCCCCCCCGGAATCGAACCCTAAGTCTACATCACCCGTCGCTCGTCACTACCATGGTAGG 65
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAA-ATTTGAATGAACCATCGCCGGCTC 241
|| ||||||||| ||||||||||||||||| | || ||||||||| |||| |||| |
Sbjct 66 CCCCTATCCTACGATCGAAAGTTGATAGGGAATAACTTTTGAATGATGCATCATCGGCAC 125
Query 242 -AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGG----C 294
||||||||||||| | || ||| |||||| | | ||| | ||| || | |
Sbjct 126 AAAGGCCATGCGATCTATCGAGCTATCATGAATGATC--GGATCAGCGAGCAGAGCCCTC 183
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCA 346
|| | ||||||||||||||| | || | || ||||||||||||| | |||
Sbjct 184 GTGAGCCTTTTATCTAATAAATGCGCCACACCCAGAAGTCGGGGTTTGTTGCA 236
>seq761528
Length=220
Score = 98.7 bits (108), Expect = 3e-18
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 144 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 203
Query 61 CCCCGTGTCGGGATTGG 77
|||||||||||||||||
Sbjct 204 CCCCGTGTCGGGATTGG 220
>seq2049377
Length=411
Score = 91.5 bits (100), Expect = 4e-16
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 53 CACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112
|||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||| |
Sbjct 88 CACTACCTCCCCGTGTAAGGATTGGG-AATTTGTGCGCCTGCTGCCTTCCTCTGATGTAG 30
Query 113 TAGCCGTTTCTCAGGCTCCC 132
|| |||||||||| ||||
Sbjct 29 TATTTGTTTCTCAGGATCCC 10
>seq2022454
Length=258
Score = 89.7 bits (98), Expect = 2e-15
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||| ||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 77 GTAGTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 18
Query 61 CCCCGTGTCGGGATTGG 77
||||||||| |||||||
Sbjct 17 CCCCGTGTCAGGATTGG 1
>seq23495
Length=2470
Score = 89.7 bits (98), Expect = 2e-15
Identities = 57/61 (93%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 445 ATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503
|||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 ATTGATTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1105
Query 504 G 504
|
Sbjct 1106 G 1106
>seq749210
Length=212
Score = 84.2 bits (92), Expect = 6e-14
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 144 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 203
Query 61 CCCCGTGTC 69
|||||||||
Sbjct 204 CCCCGTGTC 212
>seq2045901
Length=263
Score = 80.6 bits (88), Expect = 8e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| || | ||||||||||||||||||
Sbjct 195 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTGTTGTTATTTATTGTCACTACCT 254
Query 61 CCCCGTGTC 69
|||||||||
Sbjct 255 CCCCGTGTC 263
>seq1335577
Length=210
Score = 78.8 bits (86), Expect = 3e-12
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 67 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 8
Query 61 CCCCGT 66
||||||
Sbjct 7 CCCCGT 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1479015383296
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