Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq53786 143 1e-30 seq1973605 100 1e-17 >seq53786 Length=269 Score = 143 bits (158), Expect = 1e-30 Identities = 132/166 (80%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 2462 GCGCAAACAGCGGTCGGCGGTGGCGATGGCTGGCCCTGACGCCGAGCCACCAGCGGTAGA 2521 ||||||| |||||| | || ||||||||| ||||||||||| || |||| | Sbjct 208 GCGCAAA--GCGGTCTTCCACGGTGATGGCTGGTCCTGACGCCGATCCTGTTGCGGGTGT 151 Query 2522 CCTGCCGATACTGGGGCCCATGCCTCGCCAGCGCGTGTGAGGCGCTTCCGTAGGGGCGCT 2581 ||||||| | |||||| | || ||||||||||||||||||||||||||||||||| Sbjct 150 CCTGCCGGCGCCGGGGCCGAGACCATACCAGCGCGTGTGAGGCGCTTCCGTAGGGGCGCT 91 Query 2582 GCCCCTACACCCCGGATCACTGCTCCCGACAGCGTAACCATCCGCC 2627 ||||||||||||||| ||| ||||| || ||||| | |||| |||| Sbjct 90 GCCCCTACACCCCGGTTCAGTGCTCACGGCAGCGCAGCCATTCGCC 45 >seq1973605 Length=205 Score = 100 bits (110), Expect = 1e-17 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 2218 CCGGCCCTTGGGCCGGTTTTTCTTTCCTCGGTGATCGTCTGATCACGCCCGAAGGCCGCG 2277 ||||||| |||||||||||||| || | || || ||| |||| ||||||||||||| Sbjct 1 CCGGCCCCTGGGCCGGTTTTTCGTTTAAGGCTGGCCGACTGGTCACCCCCGAAGGCCGCG 60 Query 2278 AGCTACTTCCTGAAGATCTGGCCTGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGC 2337 |||| || | || || || |||||||| || ||| || ||||||||||||| Sbjct 61 AGCTGGAACCGCAGGACCTTGCATGGCTGTCCCTGCTGGCCGCACAGGCGCAGGAATGGC 120 Query 2338 GCCGGATGATGGA 2350 ||||||||||||| Sbjct 121 GCCGGATGATGGA 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21473218720244