Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq18201 98.7 3e-16 >seq18201 Length=11482 Score = 98.7 bits (108), Expect = 3e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38629 GCATTAACCGATGAAGACACCGAAATCATCTGGTTAGCTTTCGGCAACCCGACGCGTAAT 38688 ||| | ||||| || |||||||||||||||||| | || ||||| |||||||||| Sbjct 603 GCACTTACCGACGAGGACACCGAAATCATCTGGATCGCCTTCGGGAACCCGACGCAGTCC 662 Query 38689 ACCGGGCGTTTTCGTGAATGCTTCCGGCGTTACCGATCGCAGTGGGTCACGCGTCAAATT 38748 || || || || || || |||||||| || ||||| | ||||| ||||| || || Sbjct 663 ACAGGCCGCTTCCGCGAGTGCTTCCGCCGGTACCGCCACCTCTGGGTGACGCGCCACATC 722 Query 38749 GATAGCCGCAGCGTGGAAGGGATTAACACCGAGCAAATTGCGGCATGGGAAAAGGAATAC 38808 || ||||||| ||| || || | |||| || | | | | | | | || Sbjct 723 GACAGCCGCACCGTCGAGGGCACGAACAAGCAGTACCTGGACGAGTTCGTGGCGACGCAC 782 Query 38809 GGCGAGGACAGCGACTTTTTTAAGGTTCGTGTACGCGGTATTTTCCC 38855 ||||||||||||||| | | ||||| || || ||||| | ||||| Sbjct 783 GGCGAGGACAGCGACATCGTCAAGGTCCGCGTGCGCGGCCTGTTCCC 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162681076554488