Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq980070 298 1e-76 seq2008596 96.9 9e-16 seq52972 89.7 1e-13 seq979896 80.6 7e-11 >seq980070 Length=1613 Score = 298 bits (330), Expect = 1e-76 Identities = 503/726 (69%), Gaps = 4/726 (1%) Strand=Plus/Minus Query 37723 CGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCT 37782 |||||||| || ||||||||| |||| | ||||||||| | || || || || ||||| Sbjct 925 CGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAGGACGGCTTCCCGCT 866 Query 37783 CGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAA 37842 ||||| || || || |||| | || ||||| ||||||| | ||||| | || Sbjct 865 GGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCATGAACTCATCTGGTTCCTGAA 806 Query 37843 AGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGC 37902 || || || || ||| || |||| || ||||| |||| ||||| |||||||| Sbjct 805 CGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGATCTGGGACGAGTGGGC 746 Query 37903 GGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGC 37962 ||||| |||||| | || |||||||| |||||| || |||||| ||| || | Sbjct 745 CGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCGCAGCTGGCCGGCCCC 686 Query 37963 AGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCA--AACGAAATCCG 38020 ||||| |||||||||| || ||| | || |||||| ||| |||||| Sbjct 685 GGACGGCCGGCACATCGACCAGGTCAGCCAGGTGCTGGACCAGATCAGGAAC--AATCCG 628 Query 38021 CATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTG 38080 | || ||||| ||| | || ||| ||||| || || || || ||||||||||| Sbjct 627 GACTCGCGCCGCCTGATCGTCTCCGCCTGGAACGTGGCCGACGTGCCGCAGATGAAGCTG 568 Query 38081 CCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGG 38140 ||||| || || | ||| |||||||| || ||| ||||| | |||| ||| | Sbjct 567 CCGCCCTGCCACGCCTTCTTCCAGTTCTACGTGGCCGACGGCAAGCTGTCCTGCCAGCTC 508 Query 38141 CAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTG 38200 | |||||| || || | || | || |||| || || ||||| |||||| ||| Sbjct 507 TACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCGCTTCCTACGCCCTG 448 Query 38201 TTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGC 38260 |||| || ||| | ||||| || || | |||| || || || |||| | |||||| Sbjct 447 CTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGACTTCATCTGGACCGGC 388 Query 38261 GGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAG 38320 |||||| ||| ||||| || || ||||||| | | |||||||| ||||||| Sbjct 387 GGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTGCAGCTCGCGCGCGAA 328 Query 38321 CCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGACTATGAA 38380 ||| |||||||| | ||| || | || || ||||| || | || ||||| Sbjct 327 GAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCGCTGTTCGACTACAGG 268 Query 38381 TACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGTGGCG 38440 | ||||||||| || || |||||||||||||||||||| ||||| || || |||||||| Sbjct 267 TTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATCAAGGCCCCGGTGGCT 208 Query 38441 GTTTAA 38446 || ||| Sbjct 207 GTGTAA 202 >seq2008596 Length=600 Score = 96.9 bits (106), Expect = 9e-16 Identities = 272/414 (66%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 23135 TTTCCCTTTCCCATTGCGCAAGCGCGGCGACAAGCGTGATGAACAGCCTTCCCATCGCCG 23194 |||| | |||||||| || || || || || || |||||||| ||||| || || || | Sbjct 600 TTTCTCGCTCCCATTGGGCGAGAGCTGCCACGAGGGTGATGAAGAGCCTGCCAATGGCGG 541 Query 23195 TAGAAGTGTCATATACCTCTGTCGCCGAACGAAACGCCACATTGTATTTTTCGAACGTCT 23254 | | ||||||||||| || || || || ||| ||| | ||| | || ||| || Sbjct 540 TTGTGGTGTCATATACTTCGGTGGCAGATTTAAATTTCACCTGGTACTCGTCAAACTCCT 481 Query 23255 GAAGCAATAAATACAAGTCCAACACAGACCTTGTTAATCGGTCTAACCGATAAACTAGTA 23314 | || | ||| | |||||| || || | || | || |||| | ||||| | | Sbjct 480 GCAGGAGCTTATAGAGGTCCAAGACGGAGCGGGTAAGGCGATCTAGCTTGTAAACCAAAA 421 Query 23315 CAATATCGATATTTCCCTTCTTTATGTCTTTAAGCAACCGTTGCATTTGTGGGCGATTTA 23374 ||| || |||| ||| | | ||| | |||| ||||| | | ||| ||||| | Sbjct 420 CAACGTCTATATGCCCCCCTCTGACGTCCCTGAGCAGGCGTTGAAGCTCTGGACGATTCA 361 Query 23375 AATCCTTTGCAGACCAACCCTCTTCGATATACTCTTGCACAATCTCCCA-ACCTTGACTT 23433 ||||||||| ||||| || | || | | | | |||||||| ||| | || Sbjct 360 TATCCTTTGCGCTGATTCCCTCGTCTACGTAATAATCCGCGATCTCCCATCCCTGGGATT 301 Query 23434 TCACAAAATGCCCGTAACCGTTCGCGCTGAGCCGGGATAGAAAAACCTTCTTTTGCTTGT 23493 | || || || || ||||| || || || ||||| || | ||||| || |||||| Sbjct 300 TGACGTAA-GCAGTCAATCGTTCACGTTGGGCAGGGATGGAGTACCCTTCCTTCGCTTGT 242 Query 23494 TCGTCTGTGCTAACTCTCACGTAAATGGCCACTCTCAT-TAGTCAACCCCCCTT 23546 || || || || || | | |||||| | || | ||| | |||| | | |||| Sbjct 241 TCTTCGGTACTTACCCGAATGTAAATACCAACCCGCATATGGTCATCTCACCTT 188 >seq52972 Length=254 Score = 89.7 bits (98), Expect = 1e-13 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 37976 ATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTG 38035 |||||||||||||| | | | | ||||||| || || || |||| ||||||||| Sbjct 246 ATCGACCAGATCGCCGAGCTGATTGCCCAGATCAAGCGCAACCCCGATTCGCGCCGGCTG 187 Query 38036 CTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAG-ATGAAGCTGCCGCCGTGTCATTA 38094 | ||| || |||||||| || || | || | |||||||||||||| || ||| Sbjct 186 ATCGTGTCTGCCTGGAATGTGGCCGACATCC-CGCGCATGAAGCTGCCGCCCTGCCATGC 128 Query 38095 CGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGT 38154 ||| ||||||||||| ||| ||||| | |||| ||| | | |||||| || Sbjct 127 GTTCTTCCAGTTCTATGTGGCCGACGGCAAGCTGTCGTGCCAGCTCTACCAGCGCAGCGC 68 Query 38155 TGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGT 38214 ||| || | || ||| ||| || || || ||||||||||| | ||| ||||| Sbjct 67 CCATATCTTCCTCGGCGTGCGGTTCAAGATTGCCAGCTACGCGCTTCTCGTGCACATGGT 8 Query 38215 AGCCCA 38220 || || Sbjct 7 TGCGCA 2 >seq979896 Length=250 Score = 80.6 bits (88), Expect = 7e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 38305 GCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTC 38364 ||| || ||||||| |||| ||| ||||||| || | | || || ||||| Sbjct 247 GCAACTCGCGCGCGAACCGCTGCCGTTGCCGAAACTGATCATCAAGCGCAAGCCTGAAAG 188 Query 38365 TATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGAT 38424 ||||| ||||| | ||||| |||||||| ||| |||||||| | || || ||||| Sbjct 187 CATCTTCGACTACCAGTACGAGGACTTTGAGATCCTCGGCTACCAGAGCCACCCCGCGAT 128 Query 38425 TAAAGCACCGGTGGCGGTTTAA 38446 |||||||||||||| || ||| Sbjct 127 CAAAGCACCGGTGGCTGTGTAA 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127416448283650