Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq980070 208 1e-48 seq835729 87.8 3e-12 >seq980070 Length=1613 Score = 208 bits (230), Expect = 1e-48 Identities = 238/320 (74%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || ||||| || ||||| || || || || |||||||| || || ||||| |||| Sbjct 521 TGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCG 462 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGT 196898 | || ||||| |||||| |||||| |||| || |||| | ||| | |||||| | Sbjct 461 CTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGACT 402 Query 196899 TCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAAC 196958 || | ||||| ||||| ||| |||| | ||||| || |||||||||||||| || | Sbjct 401 TCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTGC 342 Query 196959 AGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTA 197018 |||| | || || | || |||| | |||||| ||||| ||||| || || Sbjct 341 AGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCGC 282 Query 197019 TCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTA 197078 | ||||| |||| ||||| |||||||| |||| ||||||||||||||||| ||||| | Sbjct 281 TGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATCA 222 Query 197079 AAGCCCCGGTGGCTATTTAA 197098 | |||||||||||| | ||| Sbjct 221 AGGCCCCGGTGGCTGTGTAA 202 Score = 163 bits (180), Expect = 4e-35 Identities = 184/245 (75%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 196119 AAGCT-GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGAT 196177 ||||| || || ||||| || ||||| ||| ||||| |||||||||||| | Sbjct 945 AAGCTCGATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAAC 886 Query 196178 CTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCAT 196237 ||||| ||||| ||||||||||| || || ||||| | || ||| || ||||| ||| Sbjct 885 CTGCAGGACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCAT 826 Query 196238 GAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTC 196297 ||||| | |||||||| ||||| ||||| ||| |||||||| || ||||| ||| Sbjct 825 GAACTCATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTC 766 Query 196298 TCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAG 196357 || |||||| |||||||||| |||| ||| |||||||| ||| | ||||| | ||| Sbjct 765 TCGATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAG 706 Query 196358 TGGCG 196362 ||||| Sbjct 705 TGGCG 701 >seq835729 Length=221 Score = 87.8 bits (96), Expect = 3e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 221 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 162 Query 3857 CAGTCCTGCCATACCTGGAGAATT 3880 | | | ||||| || |||||| Sbjct 161 CCGCTCCGCCAT---TGCAGAATT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751502540943720