Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq30681 156 2e-33 >seq30681 Length=360 Score = 156 bits (172), Expect = 2e-33 Identities = 211/292 (72%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 7222 ATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTGGT 7281 |||||||| || ||||| || || || ||||| ||||| || ||| || || | || Sbjct 49 ATTACCAGCAAGTACGGCCGGCACAAGCTTGCCAATGACGGCACGAACTTTGGCCCAGGC 108 Query 7282 CAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGATG 7341 ||||||||||||||||| ||| ||||| || ||| || | | ||| || || || Sbjct 109 CAGGCCATTGTCACGCCGAACGTGATCCGGGGCGAGTTGATTGCCGCCTATGGCGAGCTG 168 Query 7342 GAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAG--CAACATCTGATAGTTGAGC 7399 ||||| | || | ||||| ||| || ||||| || |||| ||||| || |||| Sbjct 169 GAGCGTGCCGGTTTGGTGGAGAACGCAGAAATGTTCAAGGCCAAC--CTGATCGTGGAGC 226 Query 7400 GTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 7459 || || ||| ||| ||||||||||| | | ||||| ||||| ||| || ||||||| Sbjct 227 GTGACCCGAGCAACCCGAACCGCCTGAACATCCTGTTCCCGCCGGATCTGGTGAATCAGT 286 Query 7460 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTACAGCGAGGAGGC 7511 | || |||||||| |||| | ||||||||| ||||||| ||| | ||| Sbjct 287 TGCGCGTGTTTGCGCTGCTGTATCAGTTCCGTTCGCAGTACCCCGAAGCGGC 338 Score = 156 bits (172), Expect = 2e-33 Identities = 211/292 (72%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 46811 ATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTGGT 46870 |||||||| || ||||| || || || ||||| ||||| || ||| || || | || Sbjct 49 ATTACCAGCAAGTACGGCCGGCACAAGCTTGCCAATGACGGCACGAACTTTGGCCCAGGC 108 Query 46871 CAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGATG 46930 ||||||||||||||||| ||| ||||| || ||| || | | ||| || || || Sbjct 109 CAGGCCATTGTCACGCCGAACGTGATCCGGGGCGAGTTGATTGCCGCCTATGGCGAGCTG 168 Query 46931 GAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAG--CAACATCTGATAGTTGAGC 46988 ||||| | || | ||||| ||| || ||||| || |||| ||||| || |||| Sbjct 169 GAGCGTGCCGGTTTGGTGGAGAACGCAGAAATGTTCAAGGCCAAC--CTGATCGTGGAGC 226 Query 46989 GTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 47048 || || ||| ||| ||||||||||| | | ||||| ||||| ||| || ||||||| Sbjct 227 GTGACCCGAGCAACCCGAACCGCCTGAACATCCTGTTCCCGCCGGATCTGGTGAATCAGT 286 Query 47049 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTACAGCGAGGAGGC 47100 | || |||||||| |||| | ||||||||| ||||||| ||| | ||| Sbjct 287 TGCGCGTGTTTGCGCTGCTGTATCAGTTCCGTTCGCAGTACCCCGAAGCGGC 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241208034482296