Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-34 seq9 107 5e-21 >seq4 Length=23326293 Score = 152 bits (168), Expect = 1e-34 Identities = 218/303 (72%), Gaps = 12/303 (4%) Strand=Plus/Plus Query 39 CAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98 |||||| ||||| ||| ||| ||||| ||| ||| ||| ||||||||||||| | || Sbjct 5518682 CAGCCGTGGTAAGACG--GGGGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGCACG 5518739 Query 99 CAGGCGGT---TGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGG-GAATTGCATT 154 ||||||| | | || || ||||| | | | || ||| | | ||| | Sbjct 5518740 TAGGCGGTGAATCGGGTTGAAAG---TGAAAGTCGC---CAAAAAGTGGCGGAATGCTCT 5518793 Query 155 TGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAAT 214 | || ||| ||||| | |||||| | |||||||| | |||||| ||||||| Sbjct 5518794 CGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAAT 5518853 Query 215 GCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCT 274 ||||||| | | |||||| |||| ||||||||||| | ||||| || |||||| Sbjct 5518854 CCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCT 5518913 Query 275 CATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 334 | ||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||| Sbjct 5518914 GGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAAC 5518973 Query 335 GAT 337 ||| Sbjct 5518974 GAT 5518976 Score = 87.8 bits (96), Expect = 5e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 11389226 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 11389167 Query 63 AAGCGTTAATCGGAAT 78 |||||||| |||||| Sbjct 11389166 AAGCGTTATCCGGAAT 11389151 >seq9 Length=15534364 Score = 107 bits (118), Expect = 5e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 3281878 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 3281819 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 || ||||||| ||||||||||||| | || ||||||| Sbjct 3281818 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 3281780 Score = 98.7 bits (108), Expect = 3e-18 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| |||||| || | ||| ||| |||| |||||||| ||||| || ||| ||| Sbjct 4218947 TATCTGAGGAATAAACATCAGCTGACTCTGTGCTAGCAGCCGTGGTAAGACAGAGGATGC 4218888 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | ||||| |||||||| | ||| || | | ||| | | || Sbjct 4218887 AAGCGTTATCCGGAATGATTGGGCATAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 4218828 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| ||||| |||| Sbjct 4218827 CAAATCCCAGGGCTCAACC 4218809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289599845248