Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21]
12 sequences; 266,687,832 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq4 152 1e-34
seq9 107 5e-21
>seq4
Length=23326293
Score = 152 bits (168), Expect = 1e-34
Identities = 218/303 (72%), Gaps = 12/303 (4%)
Strand=Plus/Plus
Query 39 CAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98
|||||| ||||| ||| ||| ||||| ||| ||| ||| ||||||||||||| | ||
Sbjct 5518682 CAGCCGTGGTAAGACG--GGGGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGCACG 5518739
Query 99 CAGGCGGT---TGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGG-GAATTGCATT 154
||||||| | | || || ||||| | | | || ||| | | ||| |
Sbjct 5518740 TAGGCGGTGAATCGGGTTGAAAG---TGAAAGTCGC---CAAAAAGTGGCGGAATGCTCT 5518793
Query 155 TGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAAT 214
| || ||| ||||| | |||||| | |||||||| | |||||| |||||||
Sbjct 5518794 CGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAAT 5518853
Query 215 GCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCT 274
||||||| | | |||||| |||| ||||||||||| | ||||| || ||||||
Sbjct 5518854 CCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCT 5518913
Query 275 CATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAAC 334
| ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 5518914 GGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAAC 5518973
Query 335 GAT 337
|||
Sbjct 5518974 GAT 5518976
Score = 87.8 bits (96), Expect = 5e-15
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 11389226 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 11389167
Query 63 AAGCGTTAATCGGAAT 78
|||||||| ||||||
Sbjct 11389166 AAGCGTTATCCGGAAT 11389151
>seq9
Length=15534364
Score = 107 bits (118), Expect = 5e-21
Identities = 83/99 (84%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 3281878 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 3281819
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106
|| ||||||| ||||||||||||| | || |||||||
Sbjct 3281818 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 3281780
Score = 98.7 bits (108), Expect = 3e-18
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| |||||| || | ||| ||| |||| |||||||| ||||| || ||| |||
Sbjct 4218947 TATCTGAGGAATAAACATCAGCTGACTCTGTGCTAGCAGCCGTGGTAAGACAGAGGATGC 4218888
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | ||||| |||||||| | ||| || | | ||| | | ||
Sbjct 4218887 AAGCGTTATCCGGAATGATTGGGCATAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 4218828
Query 123 GAAATCCCCGGGCTTAACC 141
||||||| ||||| ||||
Sbjct 4218827 CAAATCCCAGGGCTCAACC 4218809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289599845248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |