Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8 159 9e-37 seq6 141 2e-31 seq9 82.4 2e-13 >seq8 Length=20165712 Score = 159 bits (176), Expect = 9e-37 Identities = 130/158 (82%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 7468760 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 7468819 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 7468820 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 7468879 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 | |||| ||||| ||||| |||||||||||||| || Sbjct 7468880 CAGTTAGAGTTACTGCCGCTATTTACCGGGGCTTCCAT 7468917 >seq6 Length=21016138 Score = 141 bits (156), Expect = 2e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10299787 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 10299846 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||| ||||||||| |||||||||||| || Sbjct 10299847 TAGTTACAGCCGCCGTTCACCGGGGCTTCGGTC 10299879 Score = 77.0 bits (84), Expect = 8e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| ||||||| |||| |||||||||||| |||||||||||||||||||||| Sbjct 19868598 GCCTTTCGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTACCTTAGGA 19868547 >seq9 Length=15534364 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 9692356 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 9692415 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 9692416 CGCGCCCCTAGGTATTCTCTACCGACCCAC 9692445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799848704