Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3 199 1e-48 seq7 120 9e-25 seq2 104 7e-20 seq1 104 7e-20 seq9 77.0 1e-11 >seq3 Length=29602667 Score = 199 bits (220), Expect = 1e-48 Identities = 241/323 (75%), Gaps = 14/323 (4%) Strand=Plus/Minus Query 18 AACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGC 77 |||||||| ||||||| | || || |||||||||||||| |||||||| |||||||| | Sbjct 7518598 AACTCAAAAGAATTGATGAGGGCC-GCACAAGCGGTGGAACATGTGGTCTAATTCGATGA 7518540 Query 78 AACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT-AGAGATAGAGGTTTC 136 || ||||||||||||| ||| |||||||| | ||| ||||| | | | ||||| | Sbjct 7518539 AA-GCGAAGAACCTTATCAAGGCTTGACATGCCATGAATCCTCTTAAAAAGAGAGGGGTG 7518481 Query 137 CCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATG 196 ||||| ||| ||| || ||| ||||| ||||||||| ||||||| || | | || || Sbjct 7518480 CCCTT--GGGAACACAGACACAAATGATGTATGGTTGTCATCAGCTCATGCCATAAGGTG 7518423 Query 197 TTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGC 256 ||||||||| || | ||| ||| | |||||| | |||||||||| | | |||| || Sbjct 7518422 TTGGGTTAAATCTCACAATGAGTGTAACCCTCGTGTTTAGTTGCCA-CTATGAGTTTGGA 7518364 Query 257 ACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCAT 316 | ||| ||||||| || ||| |||||| | ||| || | ||| ||||||| Sbjct 7518363 A--------AGACCGCCGGTGTTAAGCCGAAGGAAGAAGAGGATGAAGCCAACTCATCAT 7518312 Query 317 GCCCCTTATGATTTGGGCTACAC 339 |||||||||| | ||| |||| Sbjct 7518311 GCCCCTTATGCCCTAGGCGACAC 7518289 >seq7 Length=22540073 Score = 120 bits (132), Expect = 9e-25 Identities = 120/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||||||| ||||||| || || |||||||||||||| ||||| Sbjct 6333811 ACAGGTGGTGCATGGCTGTCGTCAACTCGTGTTGTAAGGTGTTGGGTTAAGTCTCGCAAT 6333870 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||| ||| | ||||||||| | | |||| || ||||| | || ||||| Sbjct 6333871 GAGCGCAATCCTCGTGTTTAGTTGCC-GCTATGAGTTTGGAACTCTGAACAGATCGCCGG 6333929 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAA 308 || || ||||||||||| | ||| || ||||| Sbjct 6333930 TGTTAAGCCGGAGGAAGGAGAGGATGA-GTCAA 6333961 >seq2 Length=26406337 Score = 104 bits (114), Expect = 7e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||||||| || ||||||||||| | ||| || | ||| ||||||||||||||||| Sbjct 13409373 GACTGCCGGTGTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATG 13409432 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 ||||| |||||||||||||||||| | |||||||| Sbjct 13409433 CCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGG 13409472 >seq1 Length=32922458 Score = 104 bits (114), Expect = 7e-20 Identities = 124/166 (75%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 ||||||||| |||||||||||||||| |||||| |||| | |||||| |||||||||| | Sbjct 13295212 AAACTCAAAAGAATTGACGGGGACCCACACAAGTGGTGAATCATGTGCTTTAATTCGATG 13295153 Query 77 CAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTC 136 ||| ||||||||||||| | |||||| | | || ||||| | |||| | Sbjct 13295152 CAAACAGAAGAACCTTACC-AGGCTTGACGTGCCGCGAATCCTCTCG-----GAGGGGTG 13295099 Query 137 CCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCT 182 |||| || ||| | ||||||| ||||| | |||||||| || Sbjct 13295098 CCCT--CAGGAACACGGACACAGGTGGTGCATAGCTGTCGTCAACT 13295055 >seq9 Length=15534364 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 3278980 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 3278921 Query 327 ATTTGGGCTACACAC 341 ||||| |||||| Sbjct 3278920 GGCTGGGCCACACAC 3278906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999819520