Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq8 102 9e-20 seq6 95.1 1e-17 >seq8 Length=20165712 Score = 102 bits (112), Expect = 9e-20 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||| | | || | ||||||| Sbjct 7468758 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGG 7468817 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 7468818 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAG 7468877 Query 166 GACCGTTA 173 ||| |||| Sbjct 7468878 GACAGTTA 7468885 >seq6 Length=21016138 Score = 95.1 bits (104), Expect = 1e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10299787 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 10299846 Score = 75.2 bits (82), Expect = 1e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 167 || ||||||| |||| |||||||||||| |||||||||||||||||||||| Sbjct 19868597 CCTTTCGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTACCTTAGGA 19868547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199936388