Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21]
12 sequences; 266,687,832 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq8 102 9e-20
seq6 95.1 1e-17
>seq8
Length=20165712
Score = 102 bits (112), Expect = 9e-20
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105
|||| || |||||||||| || | | ||||||||| | | || | |||||||
Sbjct 7468758 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGG 7468817
Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165
|||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 7468818 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAG 7468877
Query 166 GACCGTTA 173
||| ||||
Sbjct 7468878 GACAGTTA 7468885
>seq6
Length=21016138
Score = 95.1 bits (104), Expect = 1e-17
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10299787 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 10299846
Score = 75.2 bits (82), Expect = 1e-11
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 167
|| ||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 19868597 CCTTTCGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTACCTTAGGA 19868547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547199936388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |