Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4 174 3e-41 seq9 165 2e-38 seq7 122 2e-25 >seq4 Length=23326293 Score = 174 bits (192), Expect = 3e-41 Identities = 141/170 (83%), Gaps = 7/170 (4%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||| |||||| Sbjct 11389283 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCC------TGCCTC 11389335 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | |||||||||||| | |||||||||| |||||||| |||||||||||||| |||||| | Sbjct 11389336 CTGTAGGAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 11389395 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| |||||||||| | | ||| ||||||||||||||||||| ||| Sbjct 11389396 ACTTATCATCGCCTTGGTAAACTATTGCCTCACCAACTAGCTAATCAGAC 11389445 Score = 102 bits (112), Expect = 2e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107 |||||||| |||||||| || | ||||| |||| |||| |||||||| ||| |||| Sbjct 23227594 CAGGCTTTTGCCCATTGCGGAAATTCCCCCATTGCTACCTCTTGTAGGAGTTTGGGCCGT 23227653 Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||||||| |||| ||| |||||||||||||||||| || Sbjct 23227654 GTCTCAGTCCCAGCGTGTCTGATCATCCTCTCAGACTAG 23227692 Score = 87.8 bits (96), Expect = 4e-15 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||| |||||| || |||||||||| || ||| Sbjct 15862138 CACGCGGCATTG-CTCCGTCAGGCTTTCGTCCATTGCGGAAAGTTCCCCACTGTTGTCTC 15862080 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATC 131 || ||||||||||| |||||||| | ||| ||| |||||| Sbjct 15862079 CCATAGGAGTCTGGGTTGTGTCTCAATCCCACTGTCGCTGATC 15862037 >seq9 Length=15534364 Score = 165 bits (182), Expect = 2e-38 Identities = 120/138 (87%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||| | ||||||||| || |||| ||||||||||||| Sbjct 4219004 CACGCGGCATTG-CTCTGTCAGGCGTCCGCCCATTGCGGAAAATTCTCCACTGCTGCCTC 4219062 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 4219063 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 4219122 Query 149 ACGGATCGTCGCCTTGGT 166 || |||| |||||||||| Sbjct 4219123 ACTGATCATCGCCTTGGT 4219140 >seq7 Length=22540073 Score = 122 bits (134), Expect = 2e-25 Identities = 104/126 (83%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 25 CACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTG 84 |||| | || |||||| || ||||||||||| |||| || || || | ||||||||| Sbjct 14998748 CACAAAGGCTGCATTG-CTTCATCAGGCTTTCACCCAATGCAGAAAAT-CTCCACTGCTG 14998805 Query 85 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC 144 |||||| | ||||||||| |||||||||||| | |||||| |||||||||||||| |||| Sbjct 14998806 CCTCCCATTGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACC 14998865 Query 145 AGTTAC 150 || ||| Sbjct 14998866 AGCTAC 14998871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999871360