Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-32 seq9 131 3e-28 seq7 105 1e-20 >seq4 Length=23326293 Score = 145 bits (160), Expect = 2e-32 Identities = 137/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||| ||||||| |||| Sbjct 11389288 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCC------TGCCTCCTGTAG 11389341 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||| |||||||||||||| |||||| | ||| |||||| | || ||||| || Sbjct 11389342 GAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTTAT 11389401 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| |||||| ||||| ||||||||||| |||||| | ||||||||| || Sbjct 11389402 CATCGCCTTGGTAAACTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTC 11389456 Score = 89.7 bits (98), Expect = 1e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 14 CAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 73 |||| ||| ||||||| | || ||||||| |||| |||| |||||||| |||||||| Sbjct 23227594 CAGGCTTTTGCCCATTGCGGAAATTCCCCCATTGCTACCTCTTGTAGGAGTTTGGGCCGT 23227653 Query 74 GTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 |||||||||||| ||| | | ||| |||||||| Sbjct 23227654 GTCTCAGTCCCAGCGTGTCTGATCATCCTCTCAG 23227687 Score = 77.0 bits (84), Expect = 6e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| |||||| | || | |||||||| || ||||| ||| Sbjct 15862133 GGCATTGCTCCGTCAGGCTTTCGTCCATTGCGGAAAGTTCCCCACTGTTGTCTCCCATAG 15862074 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 ||||||||| |||||||| ||||| ||| || Sbjct 15862073 GAGTCTGGGTTGTGTCTCAATCCCACTGTCGC 15862042 >seq9 Length=15534364 Score = 131 bits (144), Expect = 3e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| | | ||||||| | || || | ||||||||||||||||||||||||||||||| Sbjct 4219021 TCAGGCGTCCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 4219080 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| |||||| Sbjct 4219081 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 4219140 >seq7 Length=22540073 Score = 105 bits (116), Expect = 1e-20 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| |||| || || ||| || ||||||||||||| | ||||||| Sbjct 14998763 GCTTCATCAGGCTTTCACCCAATGCAGAAAATCTCC-ACTGCTGCCTCCCATTGGAGTCT 14998821 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 ||||||||||||||||| | |||||| | ||| |||||| | || ||||| Sbjct 14998822 GGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTAC 14998871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998399880192