Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq10 141 2e-31 seq9 109 1e-21 >seq10 Length=15557830 Score = 141 bits (156), Expect = 2e-31 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 179 ACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCT 238 ||||||||| ||| | || | | |||||||||| || ||| ||||| ||||| | Sbjct 2458364 ACGCTCCCCAACCAATGCATTTTGAATCCCACAGCTTCCGCAGATCACTTA-GCCCCATT 2458306 Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCT 298 ||| || ||| | || || || ||||||||||||||||||| |||| ||||| Sbjct 2458305 -CATCTTCACCGCAAGGGCGCTCGATCAATGAGCTATTACGCACTCTTGAAAGGGTGGCT 2458247 Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACC 358 ||||| | || || ||||||||||||| ||| | || | |||||| ||||||| Sbjct 2458246 GCTTCTAGGCAAAACTCCTGGTTGTCTTTGCACCCCCCCCTCCTTTATCACTGAGCGGTT 2458187 Query 359 ACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||| ||||||||||| ||||| |||||||||||||||| Sbjct 2458186 ATTTAGAGGCCTTAGCTGGTGATCCAGGCTGTTTCCCTCTCG 2458145 >seq9 Length=15534364 Score = 109 bits (120), Expect = 1e-21 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 |||| |||| | |||||||||||||| |||||||||||||| ||| ||| |||| Sbjct 3272680 TCTTCAAAGGGTAGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCT 3272621 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||| ||| | ||||||| ||||||| | |||||||||||||||||||||| Sbjct 3272620 TTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCG 3272563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599858688