Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq9 105 1e-20 seq4 89.7 9e-16 >seq9 Length=15534364 Score = 105 bits (116), Expect = 1e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | |||| | ||| |||||| || ||| ||||| Sbjct 3281781 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACC 3281840 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||| ||||||||| ||||| |||||| Sbjct 3281841 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 3281878 Score = 91.5 bits (100), Expect = 2e-16 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | ||||| ||| Sbjct 4218808 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTATGCCC 4218867 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||| |||||||| |||| ||| ||| Sbjct 4218868 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCACGGCTGCTAGCACAGAGTCAGC 4218927 Query 271 CGTGGCTTATTCCTCAGGTA 290 | | ||||||||||| || Sbjct 4218928 TGATGTTTATTCCTCAGATA 4218947 >seq4 Length=23326293 Score = 89.7 bits (98), Expect = 9e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276 |||||||||||||||| ||| || ||||||||||||||||||| ||||||||| || Sbjct 11389153 TCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGC 11389212 Query 277 TTATTCCTCAGGTA 290 ||||||||||| || Sbjct 11389213 TTATTCCTCAGATA 11389226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799903652