Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq8 192 9e-47 seq1 89.7 8e-16 seq7 73.4 6e-11 >seq8 Length=20165712 Score = 192 bits (212), Expect = 9e-47 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 81 ACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAA 140 |||||| ||| |||||| ||||| ||||||||||||||||||| ||| || ||||||||| Sbjct 13420792 ACTGGTACACAAGAGGTGTGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAA 13420851 Query 141 ATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTC 200 || |||||||| |||||| ||||||||||||||| |||||||| ||||||||||| Sbjct 13420852 TGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCCGAACCCAGCTC 13420911 Query 201 GCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||| || | ||||||||||||||||||||||||||| ||| Sbjct 13420912 ACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACC 13420952 >seq1 Length=32922458 Score = 89.7 bits (98), Expect = 8e-16 Identities = 124/170 (73%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 48 ACTTAGCTTCCCAGC-TATGCACTT-GGCAGTACAACTGGTGCACCAGAGGTTTGTCCAT 105 |||| ||| |||||| | | | | | |||| | ||||| | |||||||||| | ||| | Sbjct 3170563 ACTTGGCTACCCAGCGTTTACCCGTAGGCATGATAACTGTT-CACCAGAGGTGTATCCTT 3170621 Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165 || || |||||||||| | | || |||||||| || ||| |||| ||||| | Sbjct 3170622 TGCGATCTTCTCGTACTAGGAAAAGGACCTCTCAATGCTCTAACGACCACACAGGATATG 3170681 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| ||||| ||| | | |||||||||||||||| || || | ||||| Sbjct 3170682 GACTAAACTGGCTCACAATGTTCTGAACCCAGCTCATGTACCACATTAAT 3170731 >seq7 Length=22540073 Score = 73.4 bits (80), Expect = 6e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 ||||||||||||||||| ||||||||| ||| || |||| ||||| | || ||||||| Sbjct 277147 TTAATGGGCGAACAGCCTAACCCTTGGAACCACCTGCAGCTCCAGGTGGCGAAGAGCCGA 277088 Query 271 CATCG 275 ||||| Sbjct 277087 CATCG 277083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799909232