Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21]
12 sequences; 266,687,832 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq8 192 9e-47
seq1 89.7 8e-16
seq7 73.4 6e-11
>seq8
Length=20165712
Score = 192 bits (212), Expect = 9e-47
Identities = 139/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 81 ACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAA 140
|||||| ||| |||||| ||||| ||||||||||||||||||| ||| || |||||||||
Sbjct 13420792 ACTGGTACACAAGAGGTGTGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAA 13420851
Query 141 ATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTC 200
|| |||||||| |||||| ||||||||||||||| |||||||| |||||||||||
Sbjct 13420852 TGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCCGAACCCAGCTC 13420911
Query 201 GCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
||| || | ||||||||||||||||||||||||||| |||
Sbjct 13420912 ACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACC 13420952
>seq1
Length=32922458
Score = 89.7 bits (98), Expect = 8e-16
Identities = 124/170 (73%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 48 ACTTAGCTTCCCAGC-TATGCACTT-GGCAGTACAACTGGTGCACCAGAGGTTTGTCCAT 105
|||| ||| |||||| | | | | | |||| | ||||| | |||||||||| | ||| |
Sbjct 3170563 ACTTGGCTACCCAGCGTTTACCCGTAGGCATGATAACTGTT-CACCAGAGGTGTATCCTT 3170621
Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165
|| || |||||||||| | | || |||||||| || ||| |||| ||||| |
Sbjct 3170622 TGCGATCTTCTCGTACTAGGAAAAGGACCTCTCAATGCTCTAACGACCACACAGGATATG 3170681
Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215
||| ||||| ||| | | |||||||||||||||| || || | |||||
Sbjct 3170682 GACTAAACTGGCTCACAATGTTCTGAACCCAGCTCATGTACCACATTAAT 3170731
>seq7
Length=22540073
Score = 73.4 bits (80), Expect = 6e-11
Identities = 55/65 (85%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270
||||||||||||||||| ||||||||| ||| || |||| ||||| | || |||||||
Sbjct 277147 TTAATGGGCGAACAGCCTAACCCTTGGAACCACCTGCAGCTCCAGGTGGCGAAGAGCCGA 277088
Query 271 CATCG 275
|||||
Sbjct 277087 CATCG 277083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780799909232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |