Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq9 178 3e-42 seq4 170 5e-40 seq7 122 2e-25 >seq9 Length=15534364 Score = 178 bits (196), Expect = 3e-42 Identities = 137/163 (84%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| |||||| | |||||||| Sbjct 4218978 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCTGTCAGGCGTCCGCCCATT 4219037 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||| ||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 4219038 GCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 4219097 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||| |||||||||| ||||||||| |||| |||||| ||| Sbjct 4219098 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 4219140 >seq4 Length=23326293 Score = 170 bits (188), Expect = 5e-40 Identities = 152/191 (80%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 11389257 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 11389316 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||| ||||||| |||||||||||| | |||||||||| ||||||| Sbjct 11389317 GCGGAAAATTCCC------TGCCTCCTGTAGGAGTCTGGGCTGTGTCTCAGTCCCAGTGT 11389370 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| ||| |||||| ||| | ||| || | ||| Sbjct 11389371 GGCTGATCATCCTCTCGGACCAGCTACTTATCATCGCCTTGGTAAACTATTGCCTCACCA 11389430 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 11389431 ACTAGCTAATC 11389441 Score = 102 bits (112), Expect = 2e-19 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108 ||||||| |||||||| | || | ||||| |||| |||| |||||||| ||| |||| Sbjct 23227594 CAGGCTTTTGCCCATTGCGGAAATTCCCCCATTGCTACCTCTTGTAGGAGTTTGGGCCGT 23227653 Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149 |||||||| |||| ||| ||| |||||||||||||| |||| Sbjct 23227654 GTCTCAGTCCCAGCGTGTCTGATCATCCTCTCAGACTAGCT 23227694 Score = 95.1 bits (104), Expect = 3e-17 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||||||| ||| | |||||||| || |||||| | || |||||||||| || |||| Sbjct 15862138 CACGCGGCATTGCTCCGTCAGGCTTTCGTCCATTGCGGAAAGTTCCCCACTGTTGTCTCC 15862079 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132 | ||||||||||| |||||||| | ||| ||| |||| || Sbjct 15862078 CATAGGAGTCTGGGTTGTGTCTCAATCCCACTGTCGCTGATC 15862037 >seq7 Length=22540073 Score = 122 bits (134), Expect = 2e-25 Identities = 98/117 (84%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 || |||| ||| |||||||||| | |||| || || || | ||||||||||||||| | Sbjct 14998755 GCTGCATTGCTTCATCAGGCTTTCACCCAATGCAGAAAAT-CTCCACTGCTGCCTCCCAT 14998813 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||| |||||||||||| | |||||||||| |||||||||| ||||||||| Sbjct 14998814 TGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTA 14998870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399853312