Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21]
12 sequences; 266,687,832 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq9 178 3e-42
seq4 170 5e-40
seq7 122 2e-25
>seq9
Length=15534364
Score = 178 bits (196), Expect = 3e-42
Identities = 137/163 (84%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| |||||| | ||||||||
Sbjct 4218978 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCTGTCAGGCGTCCGCCCATT 4219037
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 4219038 GCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 4219097
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167
||||| |||||||||| ||||||||| |||| |||||| |||
Sbjct 4219098 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 4219140
>seq4
Length=23326293
Score = 170 bits (188), Expect = 5e-40
Identities = 152/191 (80%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 11389257 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 11389316
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||| ||||||| |||||||||||| | |||||||||| |||||||
Sbjct 11389317 GCGGAAAATTCCC------TGCCTCCTGTAGGAGTCTGGGCTGTGTCTCAGTCCCAGTGT 11389370
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| ||| |||||| ||| | ||| || | |||
Sbjct 11389371 GGCTGATCATCCTCTCGGACCAGCTACTTATCATCGCCTTGGTAAACTATTGCCTCACCA 11389430
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 11389431 ACTAGCTAATC 11389441
Score = 102 bits (112), Expect = 2e-19
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108
||||||| |||||||| | || | ||||| |||| |||| |||||||| ||| ||||
Sbjct 23227594 CAGGCTTTTGCCCATTGCGGAAATTCCCCCATTGCTACCTCTTGTAGGAGTTTGGGCCGT 23227653
Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149
|||||||| |||| ||| ||| |||||||||||||| ||||
Sbjct 23227654 GTCTCAGTCCCAGCGTGTCTGATCATCCTCTCAGACTAGCT 23227694
Score = 95.1 bits (104), Expect = 3e-17
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
|||||||||| ||| | |||||||| || |||||| | || |||||||||| || ||||
Sbjct 15862138 CACGCGGCATTGCTCCGTCAGGCTTTCGTCCATTGCGGAAAGTTCCCCACTGTTGTCTCC 15862079
Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132
| ||||||||||| |||||||| | ||| ||| |||| ||
Sbjct 15862078 CATAGGAGTCTGGGTTGTGTCTCAATCCCACTGTCGCTGATC 15862037
>seq7
Length=22540073
Score = 122 bits (134), Expect = 2e-25
Identities = 98/117 (84%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93
|| |||| ||| |||||||||| | |||| || || || | ||||||||||||||| |
Sbjct 14998755 GCTGCATTGCTTCATCAGGCTTTCACCCAATGCAGAAAAT-CTCCACTGCTGCCTCCCAT 14998813
Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150
||||||||| |||||||||||| | |||||||||| |||||||||| |||||||||
Sbjct 14998814 TGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTA 14998870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222399853312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |