Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq9 251 2e-64 seq4 250 7e-64 seq7 100 9e-19 >seq9 Length=15534364 Score = 251 bits (278), Expect = 2e-64 Identities = 243/310 (78%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 |||||||||||| |||||||||| | | |||||| ||||| |||||| ||| ||||||| Sbjct 4219142 TTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGA 4219083 Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312 ||||| ||| ||||||||||||||||||||||| |||| || | |||||||| | |||| Sbjct 4219082 CACGGCCCAGACTCCTACGGGAGGCAGCAGTGGAGAATTTTCCGCAATGGGCGGACGCCT 4219023 Query 313 GATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGG 372 || ||||| |||||||| | ||||||| |||||||| || ||| | ||||| | Sbjct 4219022 GACAGAGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCAAAG 4218963 Query 373 --AAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG 430 || |||||||||||| |||||| || | | ||| ||| |||| |||||||| || Sbjct 4218962 AAAAAATAATGACGGTATCTGAGGAATAAACATCAGCTGACTCTGTGCTAGCAGCCGTGG 4218903 Query 431 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| || ||| || ||||||||||||||| | | |||| ||||| || |||||||| Sbjct 4218902 TAAGACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCATAAAGCGTCTGTAGGTGGC 4218844 Query 491 TTCTTAAGTC 500 || | ||||| Sbjct 4218843 TTTTCAAGTC 4218834 Score = 125 bits (138), Expect = 2e-26 Identities = 98/116 (84%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 3281894 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAG 3281835 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| |||||| || ||| | |||||| ||| |||||||||||| |||||| ||| Sbjct 3281834 ACGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 3281780 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 355 AAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 |||||||| || || || | || ||||| | ||| ||||| |||||||||||||||| Sbjct 3258034 AAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACT 3258093 Query 413 ACGTGCCAGCAGCCGCGGTAATAC 436 |||||||||||||||||||| || Sbjct 3258094 CCGTGCCAGCAGCCGCGGTAAGAC 3258117 >seq4 Length=23326293 Score = 250 bits (276), Expect = 7e-64 Identities = 238/304 (78%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || | |||||||||||| ||| |||||| | Sbjct 11389448 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGTTTACCAAGGCGATGATAAGTAGCTGGT 11389389 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||| | ||| |||||||| ||||||| Sbjct 11389388 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCCAGACTCCTACAGGAGGCA- 11389330 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 11389329 -----GGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 11389275 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | ||| |||| | ||||| | || |||||| Sbjct 11389274 AGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGATGTTATCTGAGGAAT 11389215 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 11389214 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 11389155 Query 458 GAAT 461 |||| Sbjct 11389154 GAAT 11389151 Score = 98.7 bits (108), Expect = 3e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| | ||| ||| |||||||||||| |||||||||||| |||| || Sbjct 23227687 CTGAGAGGATGATCAGACACGCTGGGACTGAGACACGGCCCAAACTCCTACAAGAGGTAG 23227628 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTG 313 || ||||| | || | ||||||||||||||||| Sbjct 23227627 CAATGGGGGAATTTCCGCAATGGGCAAAAGCCTG 23227594 >seq7 Length=22540073 Score = 100 bits (110), Expect = 9e-19 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 209 CAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCT 268 ||||||| | | |||||| ||||| |||||| | | |||||||||||| ||| ||||| Sbjct 14998873 CAGTAGCTGGTCCGAGAGGATGATCAGCCACACTAGGACTGAGACACGGCCCAGACTCCA 14998814 Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGC 328 | ||||||||||||||| | || || || |||| ||||||||||| ||||| || || Sbjct 14998813 ATGGGAGGCAGCAGTGGAG-ATTTTCTGCATTGGGTGAAAGCCTGATGAAGCAATGCAGC 14998755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599820288