Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-38 seq9 123 6e-26 >seq4 Length=23326293 Score = 165 bits (182), Expect = 2e-38 Identities = 222/305 (73%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 |||||| ||||| ||| |||||| || ||| | || ||| ||||||||||||||| || Sbjct 5518682 CAGCCGTGGTAAGACG--GGGGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGCACG 5518739 Query 97 TAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGA 155 |||| ||| | || | ||||||| | | | || | ||| |||| | || Sbjct 5518740 TAGGCGGTGAATCGGGTTGAAAGTGAAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGA 5518796 Query 156 AAC---TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212 ||| | || || ||||| || || ||||||||| | |||||| |||||||| Sbjct 5518797 AACCAATTCA---CTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAAT 5518853 Query 213 GCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACT 272 ||||||| | | |||||| ||| |||||||| ||| |||| || ||| || Sbjct 5518854 CCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCT 5518913 Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332 | || ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 5518914 GGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAAC 5518973 Query 333 GATGA 337 ||||| Sbjct 5518974 GATGA 5518978 Score = 77.0 bits (84), Expect = 8e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 11389222 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 11389163 Query 65 GTTATCCGGAAT 76 |||||||||||| Sbjct 11389162 GTTATCCGGAAT 11389151 >seq9 Length=15534364 Score = 123 bits (136), Expect = 6e-26 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 3281882 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 3281823 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||| | |||||| ||||||||||||||| |||||| ||| Sbjct 3281822 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 3281780 Score = 102 bits (112), Expect = 2e-19 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| || | | ||| ||| |||| |||||||| ||||| || ||| || ||| Sbjct 4218943 TGAGGAATAAACATCAGCTGACTCTGTGCTAGCAGCCGTGGTAAGACAGAGGATGCAAGC 4218884 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||| ||||| || |||||||| || | ||||| | || ||| Sbjct 4218883 GTTATCCGGAATGATTGGGCATAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 4218824 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| | || | |||||| | ||||||||| | | | ||||| Sbjct 4218823 TCCCAGGGCTCAACCCTGTACAGGCGATGGAAACTACCAGGCTAGAGTACGGTAAGGGCA 4218764 Query 185 AGTGGAATT 193 |||||| Sbjct 4218763 GAGGGAATT 4218755 Score = 73.4 bits (80), Expect = 1e-10 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 51 ||| ||||| |||||||||||||||| |||||||||||||||||||| || Sbjct 3258068 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGAC 3258117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199855616