Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21]
12 sequences; 266,687,832 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq4 165 2e-38
seq9 123 6e-26
>seq4
Length=23326293
Score = 165 bits (182), Expect = 2e-38
Identities = 222/305 (73%), Gaps = 12/305 (4%)
Strand=Plus/Plus
Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96
|||||| ||||| ||| |||||| || ||| | || ||| ||||||||||||||| ||
Sbjct 5518682 CAGCCGTGGTAAGACG--GGGGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGCACG 5518739
Query 97 TAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGA 155
|||| ||| | || | ||||||| | | | || | ||| |||| | ||
Sbjct 5518740 TAGGCGGTGAATCGGGTTGAAAGTGAAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGA 5518796
Query 156 AAC---TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212
||| | || || ||||| || || ||||||||| | |||||| ||||||||
Sbjct 5518797 AACCAATTCA---CTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAAT 5518853
Query 213 GCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACT 272
||||||| | | |||||| ||| |||||||| ||| |||| || ||| ||
Sbjct 5518854 CCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCT 5518913
Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332
| || ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 5518914 GGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAAC 5518973
Query 333 GATGA 337
|||||
Sbjct 5518974 GATGA 5518978
Score = 77.0 bits (84), Expect = 8e-12
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 11389222 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 11389163
Query 65 GTTATCCGGAAT 76
||||||||||||
Sbjct 11389162 GTTATCCGGAAT 11389151
>seq9
Length=15534364
Score = 123 bits (136), Expect = 6e-26
Identities = 89/103 (86%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 3281882 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 3281823
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104
|| ||| | |||||| ||||||||||||||| |||||| |||
Sbjct 3281822 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 3281780
Score = 102 bits (112), Expect = 2e-19
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| || | | ||| ||| |||| |||||||| ||||| || ||| || |||
Sbjct 4218943 TGAGGAATAAACATCAGCTGACTCTGTGCTAGCAGCCGTGGTAAGACAGAGGATGCAAGC 4218884
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||| ||||| || |||||||| || | ||||| | || |||
Sbjct 4218883 GTTATCCGGAATGATTGGGCATAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 4218824
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| | || | |||||| | ||||||||| | | | |||||
Sbjct 4218823 TCCCAGGGCTCAACCCTGTACAGGCGATGGAAACTACCAGGCTAGAGTACGGTAAGGGCA 4218764
Query 185 AGTGGAATT 193
||||||
Sbjct 4218763 GAGGGAATT 4218755
Score = 73.4 bits (80), Expect = 1e-10
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 51
||| ||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 3258068 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGAC 3258117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203199855616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |