Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 2e-14 seq10 80.6 9e-13 >seq8 Length=20165712 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||||||| ||| ||||| || ||| || ||||||| ||||| ||||||||||| || Sbjct 13527141 AGGTCCGAACCGACTGATGTTCAAGAATCAGTGGATGAGTTGTGGTTAGGGGTGAAATGC 13527200 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | ||| || |||||||||||| |||||| Sbjct 13527201 CACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 13527235 >seq10 Length=15557830 Score = 80.6 bits (88), Expect = 9e-13 Identities = 175/255 (69%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | | ||| | |||||| Sbjct 2458115 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCTGGATCACCAGCTA 2458174 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||| | |||| || ||| ||| | | || || | | ||| |||||| | |||| Sbjct 2458175 AGGCCTCTAAATAACCGCTCAGTGATA--AAGGAGGGGGGGGTGCAAAGACAACCAGGAG 2458232 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 || || | |||||||||| | ||| |||||||||||| |||||| | ||||| | Sbjct 2458233 TTTTGCCTAGAAGCAGCCA-CCCTTTCAAGAGTGCGTAATAGCTCATTGATCGAGCGCCC 2458291 Query 486 GGGC-GTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG 544 || ||| | | ||| ||| ||||| ||| | ||||| ||||||| | | ||| Sbjct 2458292 TTGCGGTGAAGATGAATGGGG--CTAAGTGATCTGCGGAAGCTGTGGGAT--TCAAAATG 2458347 Query 545 -ATCGGTAGGGGAGC 558 || ||| ||||||| Sbjct 2458348 CATTGGTTGGGGAGC 2458362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599797248