Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq8 156 1e-35 seq6 125 2e-26 seq9 84.2 7e-14 >seq8 Length=20165712 Score = 156 bits (172), Expect = 1e-35 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 272 TGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA 330 || || ||| |||||||||| ||||| | || |||||| |||| || | | Sbjct 7468706 TGTCACTACGAAGCTATAGTCAAGGTGCACGTGGTCTTACCGTCTAGCTATTGGTACTCC 7468765 Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||||||| | || |||||||| ||| ||||||| Sbjct 7468766 GCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 7468825 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 || |||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 7468826 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTA 7468885 Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||| |||| ||||| |||||||| ||| Sbjct 7468886 GAGTTACTGCCGCTATTTACCGGGGCTTCCATT 7468918 >seq6 Length=21016138 Score = 125 bits (138), Expect = 2e-26 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 10299787 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 10299846 Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||| |||||||| || |||||||| Sbjct 10299847 TAGTTACAGCCGCCGTTCACCGGGGCTTC 10299875 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 393 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||| ||||||| |||| |||||||||||| ||||||||||||||||||||||| Sbjct 19868598 GCCTTTCGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTACCTTAGGAT 19868546 >seq9 Length=15534364 Score = 84.2 bits (92), Expect = 7e-14 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| ||||||||||||||| ||| || ||||| | ||| || | Sbjct 9692217 TCGACGGGTGAGTCTTACAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 9692159 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 9692158 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 9692100 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 |||||| | ||| |||||||| Sbjct 9692099 TAGAAACTATCTACCTATGACTGTCCC 9692073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399795712