Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 131 1e-25 >seq7 Length=22540073 Score = 131 bits (144), Expect = 1e-25 Identities = 543/843 (64%), Gaps = 23/843 (3%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||||| |||||||||||| | ||| ||| | Sbjct 17337196 TACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTCGACCTCTCCGGCGACGCG 17337255 Query 61159 AATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||||| | | || | || | || ||| | || ||| | || Sbjct 17337256 CGCCACTGGGACACCTCCCTCTCCCCGGACGAGCGTCACTTCGTGTCCCACGTGCTCGCC 17337315 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| |||||| ||||| | | | ||| | || Sbjct 17337316 TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCGTCCAGGTTCATGTCCGAC 17337375 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||||| || | |||||| | ||||||||||||||||| ||||| ||||| ||||| Sbjct 17337376 GTGCAGGTCGCCGAGGCGAGGGCGTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 17337435 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 |||||||||||| | || |||| || |||||| | || | | || | | || || Sbjct 17337436 TCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAG-GACCG 17337494 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| ||||||| || | ||||| || || || || || ||||| | Sbjct 17337495 CCTCTTCCGCGCCATCGTCACCGTCCCGGCCGTCCGCCGCAAGGCCGACTGGGCGATGCG 17337554 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| || |||| | || | || || | | || || || ||| Sbjct 17337555 CTGGATC-----GACGGCGGCGAGCGCTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTC 17337609 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| || || || ||| ||||| ||| | ||||| |||||||| Sbjct 17337610 GAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGACTC 17337669 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 |||||||| || |||||| ||| ||| | || || ||||||||||| | || || || Sbjct 17337670 ATGCCCGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGGCTCCACTGCGAC 17337729 Query 61633 TTTGC-TGTTTTGCTATTCAAACGCTATCTGGTG-AATCGTCCGTCGGAGGAGCGTGTGG 61690 || || || | | | | | ||| | || | | || | | | | ||| || || Sbjct 17337730 TTCGCGTGCCTCG-TCTACGAACTC-CTCCGAAGCAAGCTT--GAC-GAGTCCCGCGTCC 17337784 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCC 61748 | ||||||||| ||| || || ||||| ||| || |||| ||||| | || Sbjct 17337785 GCGAGATTGTTGCTGATGCCGTTGACATCGAGAGGGAGTTCGTCTG--CGACGCACTCCC 17337842 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 |||| | ||| | || ||||| | | || ||| ||||| || || ||||| || || Sbjct 17337843 CGTCGCGCTCGTTGGGATGAACGGGGAGCTGATGAGCCAGTACATCGAGTTTGTCGCTGA 17337902 Query 61809 CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 || || | | | |||| ||| ||| || ||| ||||| || || | Sbjct 17337903 TCGCTTGCTCATGGCGCTGGGCTGCAAGAAGATGTACAATGTTGTTAACCCCTTCGACTG 17337962 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | || || ||| | |||||||| || || |||||||| || || || ||||| Sbjct 17337963 GATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 17338022 Query 61929 TCA 61931 || Sbjct 17338023 CCA 17338025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567941855680