Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq8 168 7e-37 seq9 129 6e-25 seq7 86.0 7e-12 >seq8 Length=20165712 Score = 168 bits (186), Expect = 7e-37 Identities = 158/200 (79%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 162336 ACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGA 162395 ||| ||||| || || ||||| || |||||||| || ||||| || ||||||||||| || Sbjct 4128627 ACTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGA 4128686 Query 162396 TCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATG 162455 |||||||||||| || ||||||||||| ||||| || || || || ||| ||||||| || Sbjct 4128687 TCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTG 4128746 Query 162456 GTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAG 162515 | ||||| | ||||| || ||||| || || ||||||||||||| ||||| || | Sbjct 4128747 GATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACG 4128806 Query 162516 AGGTAACGCACTGTGAATGG 162535 || ||||| || | ||||| Sbjct 4128807 TGGAAACGCTCT-TTAATGG 4128825 >seq9 Length=15534364 Score = 129 bits (142), Expect = 6e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579 || || || |||||||||||||| ||||||||||| || ||| | ||||||||| | Sbjct 12953783 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12953842 Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTC 160639 |||||||||||||| || || || ||||||||||| | ||| || ||| ||||| ||| Sbjct 12953843 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12953902 Query 160640 AATCTCAATGGTTTCAACTTCAACCAGTC 160668 || || || || ||||| |||||||| || Sbjct 12953903 AACCTAAACGGATTCAATTTCAACCAATC 12953931 >seq7 Length=22540073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 159889 TATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 || || || ||| | ||||||||||| || | || | || || ||||| || | || Sbjct 5747995 TAGCTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGA 5748054 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 || ||| || ||| | | || || ||||| || ||||||||||| || |||| | Sbjct 5748055 GCCTGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 5748114 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || || || | ||||| || || ||||||||||| ||||| | || |||| Sbjct 5748115 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTA 5748174 Query 160069 GCTCTATAACGGTGGTCCTT 160088 ||| | || |||| ||||| Sbjct 5748175 GCTATGCAATGGTGATCCTT 5748194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375917293600