Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq8 156 5e-33 seq9 114 2e-20 seq7 100 4e-16 >seq8 Length=20165712 Score = 156 bits (172), Expect = 5e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 190809 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGAT 190868 || ||||| ||||| ||||| ||||||||||| ||||| || ||| | ||||| |||||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 190869 CCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGG 190928 || || || |||||||| ||||| |||||||| ||||| || || ||| ||||| | ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 190929 TTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGA 190988 ||||| || ||||| || ||||| ||| || |||| || || || || | ||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 190989 GGCAACGCTCT 190999 || |||||||| Sbjct 4128808 GGAAACGCTCT 4128818 >seq9 Length=15534364 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 189577 ATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGG 189636 |||||||||||||| || |||||||| ||||| | ||||||||| | ||||| ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 189637 CCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAAT 189696 || || || || || ||||| || || | || | || || ||||| |||||||| || Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 189697 GGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTT 189741 || ||||| ||||| ||||| | ||||| | |||||||| ||| Sbjct 12953912 GGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGTT 12953955 >seq7 Length=22540073 Score = 100 bits (110), Expect = 4e-16 Identities = 165/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 188903 GTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCAT--CTGCTTCATCGTCGCCTTTGT 188960 |||| ||||||||||| | ||| | | ||| | || || ||| | ||||| | Sbjct 5747965 GTGTTTTGATGATCCCTGC-CTTATTG-----ACCGTAGCTTCTGCATTATTGCCTTCAT 5748018 Query 188961 CGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTA 189020 ||| || | || |||| |||||||| || | ||| || ||| || ||| | | || Sbjct 5748019 CGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCTTTACTTTA 5748078 Query 189021 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTT 189080 ||||||||| || ||||||||||| || | ||| | || || || || | ||||| Sbjct 5748079 TGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTT 5748138 Query 189081 CTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTT 189136 ||||| || |||||||| || || | ||||||| ||| | ||| |||| ||||| Sbjct 5748139 TTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGATCCTT 5748194 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 188903 GTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACCATCTG-CTTCATCGTCGCCTTTGT 188960 |||| ||||||||||||| ||| | | | |||| | |||| || || ||||||| | Sbjct 5747376 GTGTTTTGATGATCCCTAC-CTTATTGACCGCAA-CTTCTGTATTTATTATCGCCTTCAT 5747433 Query 188961 CGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTA 189020 ||| || || || ||||| |||||||| || ||||| || || ||||||| | | || Sbjct 5747434 CGCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTA 5747493 Query 189021 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTT 189080 |||||| ||||||| || | || ||| | || |||| | | ||||| Sbjct 5747494 TGGAAA------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTT 5747547 Query 189081 CTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTT 189136 ||||| | ||||| || || || | ||| || | | ||||| |||||||||| Sbjct 5747548 TTACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTT 5747603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079904888000