Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq9 122 1e-22 seq7 116 4e-21 seq5 111 2e-19 seq8 109 6e-19 >seq9 Length=15534364 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 161298 ATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGG 161357 ||||||||||| ||| || |||||||| ||||| || ||||||||| | || || ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 161358 CCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAAC 161417 ||||| || || || ||||||||||| | ||| | || ||||| |||||||| ||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 161418 GGATTCAACTTCAACCAGTC 161437 |||||||| |||||||| || Sbjct 12953912 GGATTCAATTTCAACCAATC 12953931 >seq7 Length=22540073 Score = 116 bits (128), Expect = 4e-21 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 160624 GTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTG 160683 |||| |||||||||| | | ||| | | | | ||||| ||||| || ||| | | Sbjct 5747965 GTGTTTTGATGATCCCTGCCTTATTGACCGTAGCT-TCTGCATTATT---GCCTTCATCG 5748020 Query 160684 CTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATG 160743 | || | || | || || || ||||| | || || || || ||| | | |||| Sbjct 5748021 CAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTCTAATTCTTTACTTTATG 5748080 Query 160744 GAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCT 160803 ||||||| || ||||||||||| || ||||| |||| || || || | ||||| | Sbjct 5748081 GAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTT 5748140 Query 160804 ACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTA 160858 |||| |||||||||||||||||| ||||||| | ||| | |||||||| |||||| Sbjct 5748141 ACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAATGGTGATCCTTA 5748195 Score = 104 bits (114), Expect = 3e-17 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 160624 GTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTT 160682 |||| |||||||||| || | ||| | ||||| |||| ||||||| || ||| | Sbjct 5747376 GTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATC 5747434 Query 160683 GCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTAT 160742 || || || || || || || || ||||| || || || ||| ||||||| | | ||| Sbjct 5747435 GCAGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTAT 5747494 Query 160743 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 160802 ||||||| ||||| || | || |||| |||| |||| | | ||||| Sbjct 5747495 GGAAACA------TCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTTT 5747548 Query 160803 TACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTA 160858 ||||| | ||||| ||||||||| ||||| | | | ||||||||||||||||| Sbjct 5747549 TACCCAAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTTA 5747604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 160596 AACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCA 160655 || || ||||||||| | | ||||||||||| ||||||| | | ||| | ||| Sbjct 5748926 AAAAACCGTCTTTACATTAGATGGTTCGGTGTTTCGATGATCACTGTCTTATTGTCCGCA 5748985 Query 160656 ACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGT 160715 || | ||||||| ||| ||| | ||||| || | || || | || ||||| ||| Sbjct 5748986 ACTTCTTTATTTATTATTGCCTTCATAGCTGCCCCTCAAGTAGATACTGATGGTATTCGT 5749045 Query 160716 GAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCT 160775 || || | | |||||| | | | |||| ||||| ||||| |||| || ||||| Sbjct 5749046 GAGCCTGATTTTGGTTCTTTACTTTGTGGA---AACATTATCTCCGGTGTCATTATTCCT 5749102 Query 160776 TCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGA 160834 ||| ||||| | | ||||| | || | |||||||||||||||| || |||| Sbjct 5749103 ACTTTTGCGGCAATCAGATTGCACTTTCATCCAACTTGGGAAGCTGCATCTATTAATGA 5749161 >seq5 Length=20807039 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 164361 TTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACA 164420 ||||| || || ||||| || ||||| || | ||| ||||||| || ||||| ||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 164421 CTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCT 164480 | ||||| || ||||||||||| ||||| || | | || | ||| | || || ||| Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 164481 ATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGA 164524 |||||||| || ||||| || || ||| | ||||| || ||||| Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 >seq8 Length=20165712 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 164709 CTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGAT 164768 || || || || || ||||| ||||| ||||| || ||||| || | ||||| || ||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 164769 CCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGG 164828 |||||||||||||| ||||| || || || || || | || || || | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 164829 ATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGA 164888 ||||| | || ||||| || ||| || |||| || ||||| ||||| || | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 164889 GGTAACGCACTCTAA 164903 || ||||| || ||| Sbjct 4128808 GGAAACGCTCTTTAA 4128822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327916100800