Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq469 381 9e-104 seq131250 170 3e-40 seq514002 93.3 6e-17 >seq469 Length=7400 Score = 381 bits (422), Expect = 9e-104 Identities = 242/257 (94%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 5087 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 5144 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 5145 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCTCAAGATT 5204 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 5205 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 5264 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5265 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAAC 5324 Query 240 GGCCAT-CTCCCTCGAA 255 ||| || |||||| || Sbjct 5325 GGCGATAGTCCCTCTAA 5341 >seq131250 Length=955 Score = 170 bits (188), Expect = 3e-40 Identities = 129/149 (87%), Gaps = 11/149 (7%) Strand=Plus/Plus Query 81 GCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAG 139 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 1 GCAATGATCTATCCCCATCACGATGAAATTTCTCAAGATTACCCGGGCCTGTCGGCCAAG 60 Query 140 GTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199 | ||| |||||||||||| || ||| |||||| |||||||||||||||||| Sbjct 61 GCTATATACTCGTTGAATAG--CA-TGT-------GTGCGGTCCAGAACATCTAAGGGCA 110 Query 200 TCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||||||||||||||||| ||||| Sbjct 111 TCGCAGACCTGTTATTGCCTCAACCTTCC 139 >seq514002 Length=303 Score = 93.3 bits (102), Expect = 6e-17 Identities = 84/102 (82%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| ||| ||||| |||||| ||||||||||| |||| |||| Sbjct 303 TACAAAGGGCAGGGACGTAATCAGCGCGA-TATGATGAATCGCGCTTACTGGGAA-TTCC 246 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCC-CATCACG 102 ||||| | | ||||||||||||| | ||||| |||||| Sbjct 245 TCGTTCATGGGCAACAATTGCAATCCCCAATCCCAAATCACG 204 Score = 73.4 bits (80), Expect = 6e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 || |||||| ||||||||||| |||| ||||||||||||||||||||||| Sbjct 50 CATTGTAGCACGCGTGCGGCCTAGAATATCTAAGGGCATCACAGACCTGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 747146878700