Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20]
666,180 sequences; 481,479,386 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq469 381 9e-104
seq131250 170 3e-40
seq514002 93.3 6e-17
>seq469
Length=7400
Score = 381 bits (422), Expect = 9e-104
Identities = 242/257 (94%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 5087 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 5144
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 5145 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCTCAAGATT 5204
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 5205 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 5264
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 5265 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAAC 5324
Query 240 GGCCAT-CTCCCTCGAA 255
||| || |||||| ||
Sbjct 5325 GGCGATAGTCCCTCTAA 5341
>seq131250
Length=955
Score = 170 bits (188), Expect = 3e-40
Identities = 129/149 (87%), Gaps = 11/149 (7%)
Strand=Plus/Plus
Query 81 GCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAG 139
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1 GCAATGATCTATCCCCATCACGATGAAATTTCTCAAGATTACCCGGGCCTGTCGGCCAAG 60
Query 140 GTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199
| ||| |||||||||||| || ||| |||||| ||||||||||||||||||
Sbjct 61 GCTATATACTCGTTGAATAG--CA-TGT-------GTGCGGTCCAGAACATCTAAGGGCA 110
Query 200 TCACAGACCTGTTATTGCCTCAAACTTCC 228
|| |||||||||||||||||||| |||||
Sbjct 111 TCGCAGACCTGTTATTGCCTCAACCTTCC 139
>seq514002
Length=303
Score = 93.3 bits (102), Expect = 6e-17
Identities = 84/102 (82%), Gaps = 3/102 (3%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||||||||||| ||| ||||| |||||| ||||||||||| |||| ||||
Sbjct 303 TACAAAGGGCAGGGACGTAATCAGCGCGA-TATGATGAATCGCGCTTACTGGGAA-TTCC 246
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCC-CATCACG 102
||||| | | ||||||||||||| | ||||| ||||||
Sbjct 245 TCGTTCATGGGCAACAATTGCAATCCCCAATCCCAAATCACG 204
Score = 73.4 bits (80), Expect = 6e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211
|| |||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 50 CATTGTAGCACGCGTGCGGCCTAGAATATCTAAGGGCATCACAGACCTGT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 747146878700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |