Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq470254 251 1e-64 seq469 242 7e-62 seq154724 104 4e-20 seq594922 98.7 2e-18 >seq470254 Length=339 Score = 251 bits (278), Expect = 1e-64 Identities = 181/209 (87%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 131 ATGCACTTTACTGGGTGTTGGAGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 190 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||||||| | ||| ||||||||||||||||||||||| ||||||||||| | |||| Sbjct 191 CAAAGCAGGCTTATGCCTGAATACATTAGCATGGAATAATAAAATAGGACGTGTGATTCT 250 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| |||||||||| ||||||| ||| ||||| | |||| Sbjct 251 ATTTTGTTGGTTTCTAGGATTACCGTAATGATGAATAGGGTCAGTTGGGGGCATTTGTAT 310 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATT 247 | || ||||||||||||||||||||||| Sbjct 311 TACATCGTCAGAGGTGAAATTCTTGGATT 339 >seq469 Length=7400 Score = 242 bits (268), Expect = 7e-62 Identities = 203/245 (83%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 5978 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 5919 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 5918 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 5860 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 5859 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 5800 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 5799 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 5741 Query 314 AGGGG 318 |||| Sbjct 5740 GGGGG 5736 >seq154724 Length=844 Score = 104 bits (114), Expect = 4e-20 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 185 AATGATTAATAGGGATAGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||| |||| || ||||||| || | |||||| | || || ||||||||||||||| Sbjct 515 AATGGTTAAAAGAAATAGTCGCGGCGGCATCAGTACTGCATCGTGAGAGGTGAAATTCTT 574 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 || || |||||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 575 AGACCGATGCAAGACTAACTGAAGCGAAAGCGTTTGCCGAGGATATTTTCATTAATCA-A 633 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 634 GAACGAAAGTTAGAGG 649 >seq594922 Length=244 Score = 98.7 bits (108), Expect = 2e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 ||||||||||||||||||||||| || ||||| ||||||||||||||| | |||||| Sbjct 1 GTCAGAGGTGAAATTCTTGGATTGATGTAAGACAAACTACTGCGAAAGCATCTGCCAAGG 60 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||||| |||| ||||||| |||| ||| Sbjct 61 ATGACTTCATTGATCA-AGAACGAAGGTTAAGGG 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 909103120640