Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq469 201 5e-49 seq627199 190 8e-46 seq314183 188 3e-45 seq102402 131 7e-28 seq85039 89.7 2e-15 >seq469 Length=7400 Score = 201 bits (222), Expect = 5e-49 Identities = 218/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 3682 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTAA 3623 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 3622 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 3566 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 3565 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 3506 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 3505 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 3446 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 3445 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 3403 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||| | | | || || || Sbjct 4061 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCCGTCCAAGGC 4002 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 4001 TAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 3942 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | |||||||| | ||||||||| Sbjct 3941 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 3897 >seq627199 Length=223 Score = 190 bits (210), Expect = 8e-46 Identities = 155/186 (83%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 244 CGGTGCACTC--TTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCG 301 |||||||||| | |||| |||||||||||||| | ||| ||| |||||||| || Sbjct 40 CGGTGCACTCGGTAGTGCG--CAGGCCAGCATCAGTTTGGGTGGTTGGATAAAGACCAGT 97 Query 302 GGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACT 361 ||||||| || || ||||||| ||||||||||| |||| ||||| || || ||||| Sbjct 98 GGAATGTAGCTCCTTTCGGGGAGTGTTATAGCCACAGGTGCCATGCGACCAACCCGGACT 157 Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421 |||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 158 GAGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACA 217 Query 422 CGGACC 427 |||||| Sbjct 218 CGGACC 223 >seq314183 Length=495 Score = 188 bits (208), Expect = 3e-45 Identities = 148/176 (84%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 73 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 132 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || || |||| ||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 133 ATAGGTGAGCGACCAATAGCAAACAAGTACTGTGAGGGAAAGATGAAAAGAACTTTGGAA 192 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || ||||||||||||| |||||||| | |||| | ||||||| Sbjct 193 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACACTTGAAGTTAGACTTG 247 >seq102402 Length=1140 Score = 131 bits (144), Expect = 7e-28 Identities = 95/110 (86%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 110 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 51 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 || || ||||||||||||| ||||||| |||| ||||||||||||| Sbjct 50 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAG 1 >seq85039 Length=1286 Score = 89.7 bits (98), Expect = 2e-15 Identities = 112/148 (76%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA--- 96 ||||||||||| ||| || |||| || || || |||||||| | || ||| |||| Sbjct 350 GAGTCGAGTTGCTTGAGAGTGCAACTTAAAGTGCGAGGTAAACTACTCGTAAGGCTATGC 409 Query 97 AATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTT 154 |||| ||| | || ||||||||| ||||||| |||| ||||| ||||| || |||| Sbjct 410 AATA-CGGCTACGACACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAATAGAACTT 468 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAA 182 || | |||||||| || || ||||||| Sbjct 469 TGCAGAGAGAGTT-AACAGGGCGTGAAA 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2065710439000