Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq346209 336 6e-90 seq367454 111 4e-22 seq493689 109 1e-21 seq13270 82.4 2e-13 seq46833 78.8 2e-12 seq228218 75.2 3e-11 >seq346209 Length=457 Score = 336 bits (372), Expect = 6e-90 Identities = 321/406 (79%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 412 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGG-GCAAGTG 354 Query 68 TTAATCGG-AATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA 126 || |||| ||||||||||||||||||| || |||||| | |||||| ||| |||||| Sbjct 353 TTCTTCGGGAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTCAGAGGTGAAA 294 Query 127 TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGG 186 || | ||| ||| ||| ||| |||| ||||||| || || | ||||| Sbjct 293 GCCTGGAGCTCAACTCCAGAACTGCCTTTGAGACTGCATCGCTTGAATCCAGGAGAGGTC 234 Query 187 GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAA 246 |||||||||| |||||| ||||||| ||||||||| ||| |||||||| ||||||| Sbjct 233 AGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAA 174 Query 247 GGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATT 306 ||| ||| |||||| |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 173 GGCGGCCATCTGGGACAACACTGACGCTGAAGCACGAAAGCGTGGGGAGCAAACAGGATT 114 Query 307 AGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCC- 365 ||||||||||||||||||||||||||||||| |||| | |||||| | ||| Sbjct 113 AGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGATGTTGGTC-TCAACTCGGA 55 Query 366 --TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || || ||||||||||| ||||| ||||||||||| ||| Sbjct 54 GATCAGTGTCGAAGCTAACGCGTTAAGTTCGCCGCCTGGGGAGTAC 9 >seq367454 Length=434 Score = 111 bits (122), Expect = 4e-22 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||| | |||||| ||||||| ||||||| | | ||||| |||| || ||||||| Sbjct 236 AATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAATGCCAAAAGCAAAGGCAG 295 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | | ||||| || |||||| | ||||||| |||||||| || ||||||||||| Sbjct 296 CTCTCTGGGTCTCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAATAGGATTAGATA 355 Query 312 CCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| ||| ||||| || Sbjct 356 CCCTGGTAGTCCATGCCGTAAACAAT 381 >seq493689 Length=320 Score = 109 bits (120), Expect = 1e-21 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 208 GTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACAC 267 ||||||| ||||||| | | ||||| |||| ||||||||||| | ||||| || Sbjct 183 GTGAAATCCGTAGATCTACGAAGGAATGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTAC 124 Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 |||||| | ||||||| ||||||| ||||||||||||||||||||||||||| || Sbjct 123 CGACGCTGGGGTGCGAAAGCATGGGGAGTGAACAGGATTAGATACCCTGGTAGTCCATGC 64 Query 328 CCTAAACGAT 337 | ||||| || Sbjct 63 CGTAAACAAT 54 >seq13270 Length=3098 Score = 82.4 bits (90), Expect = 2e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 23 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACT 82 ||||||| ||||||||||||||||||| || ||| ||||||||||| |||||| | Sbjct 3007 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATA 3066 Query 83 GGGCGTAAAGCGT 95 ||||||||||||| Sbjct 3067 GGGCGTAAAGCGT 3079 >seq46833 Length=1791 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 7 TGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 66 ||| ||||||||| |||||| || ||||||||| ||||||||| || ||| ||||||| Sbjct 1321 TGAGGAATAAGCATTGGCTAATTATGTGCCAGCAACCGCGGTAAGACAGAGGATGCAAGC 1262 Query 67 GTTAATCGGAATTACTGGGCGTA 89 |||| ||||| | ||| |||| Sbjct 1261 GTTATCTGGAATGATTGGTCGTA 1239 >seq228218 Length=633 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| | ||||||| ||||||||||||||||||| || ||| ||| Sbjct 562 TATCTGAGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 503 Query 63 AAGCGT 68 |||||| Sbjct 502 AAGCGT 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1281008942720