Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq179829 140 4e-31 seq71429 87.8 2e-15 seq329789 86.0 9e-15 seq359013 77.0 4e-12 seq68336 73.4 5e-11 >seq179829 Length=755 Score = 140 bits (154), Expect = 4e-31 Identities = 177/243 (73%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 441 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 499 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 500 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------ 547 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 548 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 601 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 602 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 661 Query 246 GTA 248 ||| Sbjct 662 GTA 664 >seq71429 Length=1426 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||| |||||||||||||||| |||| | || ||| | ||||||| | |||| | Sbjct 1249 GGCACCTCTTCTCCCGAAGTTACAGGGCTACTTCGCCAAGTTCCTTAGAGAGAGTTGTCT 1308 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | | | ||||||||||||| |||||||||||||||| |||| Sbjct 1309 CGCGCCCGTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 1356 >seq329789 Length=476 Score = 86.0 bits (94), Expect = 9e-15 Identities = 124/179 (69%), Gaps = 21/179 (12%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| |||||||| || ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 105 TTCCAACACCGGGCTGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 163 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | Sbjct 164 TGTTTTTAATAAACAGTCGCTACCCCCTCGTATGTGCCA--------------------C 203 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 ||| | || | ||||||||||||||||||||||| |||||||| || |||||| Sbjct 204 TTTCCTAATCAAAAGATCCCCTTCTCCCGAAGTTACGGGGTCATTTTGCAGAGTTCCTT 262 >seq359013 Length=443 Score = 77.0 bits (84), Expect = 4e-12 Identities = 70/87 (80%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 130 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 188 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCC 92 || |||||| |||||||||||| ||| Sbjct 189 TGCATTTTTAATAAACAGTCGCTACCC 215 >seq68336 Length=1462 Score = 73.4 bits (80), Expect = 5e-11 Identities = 72/92 (78%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTA-----TACATCGACTTACCGTCTTCGCAC 60 ||||||| ||||||||||| ||||| | || ||||||| ||||| ||| ||| Sbjct 1128 CCTTCCAGCACCGGGCAGGTGTCAGACTCTACTCTATACATCGTGTTACCA-CTTAGCAG 1070 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCC 92 | |||||||||||| |||||||||||| ||| Sbjct 1069 AGTCCTGTGTTTTTAATAAACAGTCGCTACCC 1038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689918607140