Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq179829 87.8 2e-15 seq359013 78.8 9e-13 seq355639 75.2 1e-11 seq329789 73.4 4e-11 seq68336 73.4 4e-11 >seq179829 Length=755 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 542 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 483 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 482 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 437 >seq359013 Length=443 Score = 78.8 bits (86), Expect = 9e-13 Identities = 75/95 (79%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||| ||| ||||||| || | || || Sbjct 222 ATACCAGGG-GTAGCGACTGTTTATTAAAAATGCAGGACTCTGCTAAGTGGTAACACGAT 164 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 163 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 129 >seq355639 Length=447 Score = 75.2 bits (82), Expect = 1e-11 Identities = 70/87 (80%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 69 CGACTGTTTATTAAAAACACAGCACTCTGC--AAACACG-AAAGTGGACGTATAGGGTGT 125 |||||||||| | ||||||||||||||||| ||| | | ||| | | |||||| |||| Sbjct 210 CGACTGTTTAATTAAAACACAGCACTCTGCTGAAAGATGAAAAATCTAAGTATAGAGTGT 269 Query 126 GACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||||| |||||| Sbjct 270 GATATCTGCCCGGTGCCGGCTGGTTAA 296 >seq329789 Length=476 Score = 73.4 bits (80), Expect = 4e-11 Identities = 73/95 (77%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||| ||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 196 ATACGAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 137 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| || |||||||| |||| || Sbjct 136 GTATAGAGTCTGACACCAGCCCGGTGTTGGAAAGT 102 >seq68336 Length=1462 Score = 73.4 bits (80), Expect = 4e-11 Identities = 77/100 (77%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 1031 ATACCAGGG-GTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 1089 Query 115 GTA-----TAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 ||| ||| || |||| |||||||||||| ||||||| Sbjct 1090 GTATAGAGTAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473722914580