Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq179829 273 5e-71 seq359013 168 2e-39 seq329789 125 2e-26 seq355639 114 3e-23 seq36521 107 5e-21 seq68336 89.7 1e-15 seq505876 80.6 7e-13 >seq179829 Length=755 Score = 273 bits (302), Expect = 5e-71 Identities = 309/418 (74%), Gaps = 26/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 251 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 310 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 370 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||||| | | || | ||| Sbjct 371 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 430 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 431 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 490 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| | | | Sbjct 491 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 550 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 | | || ||| | ||||||||||||||||||| || || Sbjct 551 -TGAGGG---------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 588 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 589 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 646 >seq359013 Length=443 Score = 168 bits (186), Expect = 2e-39 Identities = 173/225 (77%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||| Sbjct 5 TCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 64 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACC 187 |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 65 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACACT 118 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | | ||||||| |||||||||||| |||| || |||||| || || | || Sbjct 119 TCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTT 178 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 ||||||| ||| |||||||||||||||||| | |||||||| Sbjct 179 AGCAGAGTCCTGCATTTTTAATAAACAGTCGCTAC-CCCTGGTAT 222 >seq329789 Length=476 Score = 125 bits (138), Expect = 2e-26 Identities = 149/200 (75%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 94 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACC 153 ||||| |||||||||||||||||||| |||||| |||| | ||| ||||||||||||| Sbjct 4 ACTTATGCGACAAGGAATTTCGCTACCATAGGACAGTTAGAGGTACTGCCGCCGTTTACC 63 Query 154 GGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAAT-TAACCTTCCGGCACCGG 212 |||||||| || | ||| ||| | || | || | || |||| |||||| Sbjct 64 GGGGCTTCCATTCAAAGC------TTATCACACTTC-TCTTTCCGACTTTCCAACACCGG 116 Query 213 GCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAA 272 || || |||| || |||||| || || | || ||||||| |||||||||||||||| Sbjct 117 GCTGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAA 176 Query 273 CAGTCGCAGCGGCCTGGTAT 292 ||||||| | ||| |||| Sbjct 177 CAGTCGCTACCCCCTCGTAT 196 >seq355639 Length=447 Score = 114 bits (126), Expect = 3e-23 Identities = 159/219 (73%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| |||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 427 ATCGTTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 368 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGC 182 || | | |||| ||||||| || ||||||| ||| || | | | || || Sbjct 367 CCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTAGTATATT 309 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTT 241 || || |||||| |||||||||||||| |||||| |||||| | | ||| Sbjct 308 AAATTATCTCTGTTAACCAGCCGGCACCGGGCAGATATCACACTCTATACTTAGATTTTT 249 Query 242 CGTGTTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | ||| ||||||||||||||||| | |||||||||| Sbjct 248 CATCTTTCAGCAGAGTGCTGTGTTTTAATTAAACAGTCG 210 >seq36521 Length=2020 Score = 107 bits (118), Expect = 5e-21 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 |||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||| || Sbjct 1619 GGTCGGAACTTACCTGACAAGGAATTTCTCTACCTTAGGACCATTATAGTTACGGCCACC 1678 Query 147 GTTTACCGGGGCTT 160 ||| |||||||||| Sbjct 1679 GTTCACCGGGGCTT 1692 >seq68336 Length=1462 Score = 89.7 bits (98), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 12/176 (7%) Strand=Plus/Minus Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAG 181 |||||| |||| ||||| |||||||||| |||||||||| || | ||||| | Sbjct 1199 TAGGACAGTTAGAGTTACTGCCGCCGTTTGCCGGGGCTTCCATTCAAAGCTTATCACA-- 1142 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTA-----TACGTCC 236 || | || || ||||||| |||||||||||| |||| || ||| ||| || Sbjct 1141 CTT-CTCCTTCCG---ACCTTCCAGCACCGGGCAGGTGTCAGACTCTACTCTATACATCG 1086 Query 237 ACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 || | || ||||||| ||||||||||||||||||||||| | |||||||| Sbjct 1085 TGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTAC-CCCTGGTAT 1031 >seq505876 Length=310 Score = 80.6 bits (88), Expect = 7e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| Sbjct 152 CCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1252400802560