Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq179829 338 1e-90 seq359013 190 4e-46 seq329789 181 2e-43 seq68336 120 6e-25 seq36521 111 3e-22 seq367831 80.6 6e-13 >seq179829 Length=755 Score = 338 bits (374), Expect = 1e-90 Identities = 290/356 (81%), Gaps = 13/356 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 251 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 310 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 370 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 371 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 430 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 431 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 490 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG 296 || || ||||||||||||||||||||||||| |||||| || ||||| || || Sbjct 491 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 550 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 551 TGAGGG---GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 603 >seq359013 Length=443 Score = 190 bits (210), Expect = 4e-46 Identities = 214/285 (75%), Gaps = 21/285 (7%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||||||| |||| ||||| ||||||||||||||||||||||||||| Sbjct 5 TCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 64 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 |||| |||||| |||||||||||| ||||||| |||| ||| | | ||| Sbjct 65 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCACA 116 Query 182 GATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGAC 239 || |||| |||||||||||||||||||| ||||| ||||||||||| || | || Sbjct 117 CTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCAC 176 Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC- 298 |||||||| |||| ||||| ||||||||||| | ||| | | ||| || | | Sbjct 177 TTAGCAGAGTCCTGCATTTTTAATAAACAGTCGC-TACCCCTGGTATGTGCCGCTTTCCT 235 Query 299 -----ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTC 334 | ||| || |||||||||||||| ||||||||||||| Sbjct 236 AATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTC 280 >seq329789 Length=476 Score = 181 bits (200), Expect = 2e-43 Identities = 210/281 (75%), Gaps = 13/281 (5%) Strand=Plus/Plus Query 88 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACT 147 ||||| |||||||||||||||||||| |||||| |||| || ||| |||||||||||| Sbjct 4 ACTTATGCGACAAGGAATTTCGCTACCATAGGACAGTTAGAGGTACTGCCGCCGTTTACC 63 Query 148 GGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTA--ACCTTCCAGCACCG 205 ||||||| |||| |||| | ||| || | || || ||||| ||||| Sbjct 64 GGGGCTTCCATTCAAAGCTTA--------TCACACTTCTCTTTCCGACTTTCCAACACCG 115 Query 206 GGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAA 265 ||| || ||||| ||||||||||| || | |||||||||| ||||||||||| ||| Sbjct 116 GGCTGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAA 175 Query 266 ACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATA--GACAGGCACCCCTTCTCCCTAA 323 ||||||||| ||| | | ||| || || || | | | ||||||||||| || Sbjct 176 ACAGTCGCTACCCCCTCGTATGTGC-CACTTTCCTAATCAAAAGATCCCCTTCTCCCGAA 234 Query 324 GTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||||||| ||||||||| || |||||| Sbjct 235 GTTACGGGGTCATTTTGCAGAGTTCCTTCGACATGGTTCTC 275 >seq68336 Length=1462 Score = 120 bits (132), Expect = 6e-25 Identities = 127/166 (77%), Gaps = 15/166 (9%) Strand=Plus/Minus Query 116 TAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCT 175 |||||| |||| |||||| |||||||||| | ||||||| |||| |||| Sbjct 1199 TAGGACAGTTAGAGTTACTGCCGCCGTTTGCCGGGGCTTCCATTCAAAGCTTA------- 1147 Query 176 CTAACAGATCCCCTTA--ACCTTCCAGCACCGGGCAGGCGTCAG-CTC----CTATACAT 228 | ||| || |||| |||||||||||||||||||| ||||| ||| |||||||| Sbjct 1146 -TCACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTACTCTATACAT 1088 Query 229 CGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 ||| || | |||||||||| ||||||||||| |||||||||||| Sbjct 1087 CGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCT 1042 >seq36521 Length=2020 Score = 111 bits (122), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 79 CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCG 138 |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1617 CGGGTCGGAACTTACCTGACAAGGAATTTCTCTACCTTAGGACCATTATAGTTACGGCCA 1676 Query 139 CCGTTTACTGGGGCTT 154 ||||| || ||||||| Sbjct 1677 CCGTTCACCGGGGCTT 1692 >seq367831 Length=434 Score = 80.6 bits (88), Expect = 6e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105 |||| | ||| || || |||| ||||||||| || |||||||||||| ||||| ||| Sbjct 317 TGAGCCTCTGCTCAGATTGTTATACCTTTCGTGTGGTTCGGAACTTACCTAACAAGTAAT 376 Query 106 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 || || |||||| ||| ||||||| || || ||| || ||||||| Sbjct 377 TTTGCCACCTTACGACAATTATAGTAACAATCGTTGTTCACCGGGGCTT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055322503680