Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq19099 156 1e-35 seq94916 141 3e-31 seq66642 118 3e-24 seq381636 114 4e-23 seq102373 113 1e-22 seq624004 109 2e-21 seq156216 93.3 1e-16 seq120116 91.5 4e-16 seq544490 89.7 2e-15 seq43078 77.0 1e-11 >seq19099 Length=2687 Score = 156 bits (172), Expect = 1e-35 Identities = 153/197 (78%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 2273 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCACACAAGCGGTGGAGCAT 2332 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||| || |||| || ||||||||||||| |||||||| | | ||| Sbjct 2333 ATGGTTTAATTTGATGCAAAGCAAAGAACCTTACCAGGGCTTGACATGCCACAAATCCTG 2392 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | || || | ||| | ||| | | ||||||| ||||||| ||||||||| Sbjct 2393 TTGAAAGAGGGGGTGCCCTT---GGGAATGCGGACACAGGTGGTGCATGGCTGTCGTCAG 2449 Query 181 CTCGTGTCGTGAGATGT 197 |||||| ||| || ||| Sbjct 2450 CTCGTGCCGTAAGTTGT 2466 >seq94916 Length=1200 Score = 141 bits (156), Expect = 3e-31 Identities = 130/162 (80%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 21 TCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAAC 80 || || |||| ||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 159 TCCAAAGAAT-GACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAA 101 Query 81 GCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCT 140 |||||||||||||||| |||||||| | || ||||| || | || || | |||| Sbjct 100 GCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGGGGGGTGCCCT 41 Query 141 TCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCT 182 | ||| || | ||||||| ||||||| ||||||||||| Sbjct 40 T--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCT 1 >seq66642 Length=1482 Score = 118 bits (130), Expect = 3e-24 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 287 AGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCT 346 ||||||| | ||| || | ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 1482 AGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCT 1423 Query 347 ACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTT 406 ||||||| | |||||||| |||| ||||||| ||| || ||| ||| || Sbjct 1422 ACAATGGGCGGGACAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTC 1363 Query 407 CTCAGTTCGGATTGTAGTCTGCAAC 431 |||||||||||||| || ||||||| Sbjct 1362 CTCAGTTCGGATTGCAGGCTGCAAC 1338 >seq381636 Length=420 Score = 114 bits (126), Expect = 4e-23 Identities = 152/208 (73%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 |||| |||| | ||| || | ||| |||||||||||| |||| || || | ||||||| Sbjct 420 GGAGCAAGGAGAGGATGAGGCCAAGTCATCATGCCCCATATGCCCTGAGCAATACACGTG 361 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTG 404 ||||||||||| |||||||| || |||| ||| ||| || ||| ||| Sbjct 360 CTACAATGGACGGGACAAAGGGTCTCGTGACCG---GGT-GAGCTAACTCCAAAAACCCA 305 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 | || |||| |||||| | |||||||||| || |||||| ||||| |||||||||| Sbjct 304 TCCTTAGTTTGGATTGCAAGCTGCAACTCGCCTTCCTGAAGCAAGAATCACTAGTAATCG 245 Query 465 TAGATCAG-CATGCTACGGTGAATACGT 491 || ||| ||| | |||||||| ||| Sbjct 244 ATGAGCAGTCATACGGCGGTGAATCCGT 217 >seq102373 Length=1140 Score = 113 bits (124), Expect = 1e-22 Identities = 142/191 (74%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAA 363 |||| || |||| |||||||| | ||| |||||||||||| | ||| |||| |||| Sbjct 53 TCAAGTCCGCATGGCCCTTATGGGCTTGGCCACACACGTGCTATAGTGG-CAATGACAAT 111 Query 364 GGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAG 423 ||| || | || | ||| |||| ||||| | |||| | ||| |||| |||||| Sbjct 112 GGGAAGTAAGACTGTAAGGCGAAGCGAATCCAA-AAAGATTAACTCGGTTCAGATTGTTC 170 Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGT 483 ||||||||||| | |||||| | ||||||||||||||| | |||||||| | ||| Sbjct 171 TCTGCAACTCGGGAACATGAAGTTAAAATCGCTAGTAATCGCATATCAGCATCCCGTGGT 230 Query 484 GAATACGTTCC 494 ||||| || || Sbjct 231 GAATATGTACC 241 >seq624004 Length=225 Score = 109 bits (120), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | ||||| |||||||||||||||| |||||||||||||||| ||| Sbjct 43 TACGGTCGCAAGACTAAAACTTAAAGGAATTGACGGGGGTCCGCACAAGCGGTGGAACAT 102 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA-TCCTCTGACCCCT 119 |||||||||||||| |||||| |||||||||| |||||| | | ||| || Sbjct 103 GTGGTTTAATTCGACAGTACGCGAGGAACCTTACCTGGGTTTGACATTGTTGCGACAGCT 162 Query 120 CTAGAGATAGAG--GTTTCCCCTTCGG--GGGACAGAGTGACAGGTGATGCATGGTTGTC 175 |||| ||| || ||| ||||| || | | ||||||| ||||||| |||| Sbjct 163 GTAGAAATACAGTCTTTTAGGTTTCGGCTTAAACGCAATAACAGGTGCTGCATGGCTGTC 222 Query 176 GTC 178 ||| Sbjct 223 GTC 225 >seq156216 Length=838 Score = 93.3 bits (102), Expect = 1e-16 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||||| |||| ||||||| ||| || || ||| || |||| || |||| Sbjct 1 ACAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTTCAAAAACACGTCCTCAATTTGGAT 60 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA-GCATGC 477 ||||| ||||||||| || ||||||| ||||| |||||||||||| | ||| |||| | Sbjct 61 TGTAGGTTGCAACTCGCCTGCATGAAGCAGGAATTGCTAGTAATCGTCGGTCAGGCATAC 120 Query 478 TACGGTGAATACGTTC 493 |||||||| ||||| Sbjct 121 ATCGGTGAATCCGTTC 136 >seq120116 Length=1020 Score = 91.5 bits (100), Expect = 4e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||||| ||||||||||| | |||||| || ||||||||||||| | Sbjct 40 CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATGGCG 99 Query 467 GATCAGCATGCTACGGTGAATACGTTCCCG 496 ||||||||||| ||||||||| | |||| Sbjct 100 GATCAGCATGCCGCGGTGAATATGCACCCG 129 >seq544490 Length=279 Score = 89.7 bits (98), Expect = 2e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||| ||||| ||| |||||| ||| Sbjct 116 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGATATGTTTGGTCAAGTCCTCTAAC 57 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 56 GAGCGAAACCCT 45 >seq43078 Length=1866 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 395 CATAAAG-TTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATC 453 || |||| ||||| |||| | |||||| ||||||||||| |||||| || |||| Sbjct 28 CAGAAAGATTGTT-TCAGCTTGGATTGATCTCTGCAACTCGGGAGCATGAAGTTGAAATC 86 Query 454 GCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 | |||||| | ||||||||||| |||||||||| || |||| |||| Sbjct 87 TCAAGTAATTGCGGATCAGCATGCCACGGTGAATATGTACCCGGGCCCT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1493980652800