Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq469 300 2e-79 seq473929 98.7 2e-18 seq131250 86.0 1e-14 seq514002 73.4 6e-11 >seq469 Length=7400 Score = 300 bits (332), Expect = 2e-79 Identities = 224/260 (86%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5231 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5290 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 5291 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 5350 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 5351 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 5410 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5411 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 5470 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 5471 GAAAGAGCTCTCAGTCTGTC 5490 >seq473929 Length=336 Score = 98.7 bits (108), Expect = 2e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||| ||||||||| |||||| ||||| || || || |||||||||||| Sbjct 148 AGGTCTCACTCGTTATCGCAATTAAGCAGACGTTTCGGAATACGAATCAAGAACGGCCAT 89 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| || ||||||||||||||||||||||||||| Sbjct 88 GCACCACCATCCTCTGAATCAAGAAAGAGCTATCAATCTGTC 47 >seq131250 Length=955 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 |||| | |||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 78 TAGCATGTGTGCGGTCCAGAACATCTAAGGGCATCGCAGACCTGTTATTGCCTCAACCTT 137 Query 82 CCATT 86 || || Sbjct 138 CCTTT 142 >seq514002 Length=303 Score = 73.4 bits (80), Expect = 6e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 66 || || |||||| ||||||||||| |||| ||||||||||||||||||||||| Sbjct 53 CGCCATTGTAGCACGCGTGCGGCCTAGAATATCTAAGGGCATCACAGACCTGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791657756580