Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq469 399 4e-109 seq202846 320 3e-85 seq15471 205 2e-50 seq14975 136 7e-30 seq340215 118 2e-24 >seq469 Length=7400 Score = 399 bits (442), Expect = 4e-109 Identities = 265/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || ||||||||||||||||||||||||||||||| Sbjct 1294 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1352 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1353 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1412 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1413 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1472 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1473 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1532 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| | |||||||||||||||||||| |||||| |||| |||||| Sbjct 1533 CAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 1585 >seq202846 Length=691 Score = 320 bits (354), Expect = 3e-85 Identities = 224/253 (89%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 304 GTCATCAGAAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 245 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| Sbjct 244 ATTTGTGGGTGAACAATCCAACACTTGGCGAATTCTGCTTCGCAATGTTAGGAAGAGCCG 185 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 184 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 125 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGAT 267 |||||||||| ||||||| ||||||| || ||| ||| | | | ||||||||| | Sbjct 124 CCTGTGGTAATTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGCT 67 Query 268 AGGCCACACTTTC 280 ||||| ||||| Sbjct 66 AGGCCTGGCTTTC 54 >seq15471 Length=2921 Score = 205 bits (226), Expect = 2e-50 Identities = 127/136 (93%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 136 TCATCAGTAGGGTAAAACTAACCGGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 77 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| Sbjct 76 TTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCCATGATAGTAAGAGCCGA 17 Query 151 CATCGAAGGATCAAAA 166 ||||| |||||| ||| Sbjct 16 CATCGCAGGATCCAAA 1 >seq14975 Length=2960 Score = 136 bits (150), Expect = 7e-30 Identities = 136/174 (78%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| |||||| |||||||||| ||| ||||| ||||||||| |||| || ||| Sbjct 312 GAATTTTGCTTCACAATGATAGGAA-AGCTGACATTTGAGGATCAAAG-GCAATGTTGCT 255 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || ||| ||| || |||||||||||||||| ||||||||||||| || ||||||| | Sbjct 254 ATTAACATTTGACTTTCACAAGCCAGTTATCCTTGTGGTAACTTTTTTGACACCTCTGGT 195 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||||| ||| | |||||| || ||| | || ||||||||||||||||| Sbjct 194 TTCAAACACCGAAGATCTAAAGAGTCAATAAGTCATGCTTTCATGGTTTGTATT 141 >seq340215 Length=464 Score = 118 bits (130), Expect = 2e-24 Identities = 65/65 (100%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 459 Query 152 ATCGA 156 ||||| Sbjct 460 ATCGA 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 848708158080