Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq420953 150 4e-34 seq53078 140 7e-31 seq99089 125 2e-26 seq505354 122 2e-25 seq620807 120 6e-25 seq337864 107 4e-21 seq334432 100 6e-19 seq105233 100 6e-19 seq46833 96.9 7e-18 seq3989 89.7 1e-15 seq410458 87.8 4e-15 seq376558 86.0 1e-14 seq166101 84.2 5e-14 seq28519 78.8 2e-12 >seq420953 Length=382 Score = 150 bits (166), Expect = 4e-34 Identities = 107/123 (87%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 73 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCA 132 ||||||| | |||||||||||||||||||| |||||||||||| | |||||| |||||| Sbjct 369 TCCCCACCGTTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGTTGATCA 310 Query 133 TCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAA 192 ||||||| ||||| ||| |||| |||||||||| ||| ||| |||| |||||||||||| Sbjct 309 TCCTCTCGAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCGCCAACTAGCTAA 250 Query 193 TCC 195 ||| Sbjct 249 TCC 247 >seq53078 Length=1679 Score = 140 bits (154), Expect = 7e-31 Identities = 115/142 (81%), Gaps = 11/142 (8%) Strand=Plus/Minus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 ||| |||| || |||| ||||||||||||||| ||||||||| ||||| Sbjct 1459 GCCTATTGCGAAAAATTCTCCACTGCTGCCTCCCATAGGAGTCT-----------CAGTT 1411 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 |||||||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| | Sbjct 1410 CCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGC 1351 Query 177 CTCACCAACTAGCTAATCCGAC 198 |||||||||||||||||| ||| Sbjct 1350 CTCACCAACTAGCTAATCAGAC 1329 >seq99089 Length=1166 Score = 125 bits (138), Expect = 2e-26 Identities = 88/99 (89%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| |||||| |||| ||||||| |||||||||||||||||||| |||||||||||| Sbjct 461 TTCACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGC 403 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| ||||| |||||| || |||||||||||| ||||| Sbjct 402 TGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGT 364 >seq505354 Length=310 Score = 122 bits (134), Expect = 2e-25 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||| ||||| |||||||||||| |||||||| |||||||||| ||||||| | Sbjct 269 CCGTAGGATTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCT 210 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 | | ||| | | |||||| |||| |||||| |||||||| ||||| | || |||||||| Sbjct 209 AAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCAT 150 Query 209 CTGATAGCGC 218 | | ||||| Sbjct 149 CAAACAGCGC 140 >seq620807 Length=227 Score = 120 bits (132), Expect = 6e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 95 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 154 |||||||| |||||||||||| | |||||| ||||||||||||| ||||| ||| ||| Sbjct 227 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGTTGATCATCCTCTCGAACCAGCTACTGAT 168 Query 155 CGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCC 195 | |||||||||| ||| ||| |||| ||||||||||||||| Sbjct 167 CATCGCCTTGGTAAGCTATTGCCTCGCCAACTAGCTAATCC 127 >seq337864 Length=467 Score = 107 bits (118), Expect = 4e-21 Identities = 139/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 28 ACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87 ||| | || |||| |||||| |||||| | ||||||||||| |||| ||||||| || Sbjct 362 ACAAGTGGTATTGT-TGGATCGGGCTTTTGTCCATTGTCCAAAATTCTCCACTGCAGC-- 306 Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGT 147 ||| | | |||| | |||||||||| |||||||||| ||||||||| ||| || Sbjct 305 CCCATGGAAGTCCGAGCCGTGTCTCATTTCCAGTGTGGGTGATCATCCGAAAAGAACAAC 246 Query 148 TACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCA 207 || | ||| | | |||||| |||| | | | | |||||| ||||| | | || |||| Sbjct 245 TAAGCATCATTGGCTTGGTTAGCCTTGATGTGATCAACTACCTAATACTATGCAGACTCA 186 Query 208 TCTGATAGCG 217 | |||||| Sbjct 185 TTAAATAGCG 176 >seq334432 Length=471 Score = 100 bits (110), Expect = 6e-19 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| |||||| |||| ||||||| |||||||||||||||||||| |||||||||||| Sbjct 409 TTCACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGC 351 Query 83 TGCCTCCCGTAGGAGTCTGG 102 |||| ||||| |||||| || Sbjct 350 TGCCCCCCGTGGGAGTCCGG 331 >seq105233 Length=1120 Score = 100 bits (110), Expect = 6e-19 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| |||||| |||| ||||||| |||||||||||||||||||| |||||||||||| Sbjct 63 TTCACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGC 121 Query 83 TGCCTCCCGTAGGAGTCTGG 102 |||| ||||| |||||| || Sbjct 122 TGCCCCCCGTGGGAGTCCGG 141 >seq46833 Length=1791 Score = 96.9 bits (106), Expect = 7e-18 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| | | |||||||||||| ||| || |||||||| | ||||||| Sbjct 1382 CACACGGCATTGCTTCG-TCAGGCTTTCGCATATTACGGAAAATTCCCCATTACTGCCTC 1440 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 | |||||| ||||| ||||||||||| |||||||| |||||||| Sbjct 1441 CGGTAGGATTCTGGGTCGTGTCTCAGTCCCAGTGTGTCTGATCAT 1485 >seq3989 Length=4564 Score = 89.7 bits (98), Expect = 1e-15 Identities = 94/122 (77%), Gaps = 9/122 (7%) Strand=Plus/Minus Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||| || || ||||||||||||||| | |||| |||||||||| ||||| || |||| Sbjct 235 CCATTGTTGTCTCCCGTAGGAGTCTAGGCCGT--CTCAGTTCCAATGTGATCGACTATCC 178 Query 136 TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCC 195 |||| || || |||| ||| |||||| ||||||| ||| ||||||||||||| Sbjct 177 TCTC----CA---ACTGATCATCGTCTTGGTAAGCCATTGTATCAGCAACTAGCTAATCG 125 Query 196 GA 197 || Sbjct 124 GA 123 >seq410458 Length=392 Score = 87.8 bits (96), Expect = 4e-15 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 28 ACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87 ||| | || |||| |||||| |||||| | ||||||||||| |||| ||||||| || Sbjct 195 ACAAGTGGTATTGT-TGGATCGGGCTTTTGTCCATTGTCCAAAATTCTCCACTGCAGC-- 251 Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||| | | |||| | |||||||||| |||||||||| |||||||| Sbjct 252 CCCATGGAAGTCCGAGCCGTGTCTCATTTCCAGTGTGGGTGATCATC 298 >seq376558 Length=425 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 |||||||| |||||||||||||| || ||| ||| |||| |||| || || || ||| | Sbjct 1 CCAGTGTGGCTGATCATCCTCTCGGATCAGCTACTGATCATCGCTTTAGTAAGTTATTGC 60 Query 177 CTCACCAACTAGCTAATCCGAC 198 | |||||||||||||||| ||| Sbjct 61 CACACCAACTAGCTAATCAGAC 82 >seq166101 Length=801 Score = 84.2 bits (92), Expect = 5e-14 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| || ||| |||| ||||||||||||||| |||||||||||| |||||||| ||| Sbjct 366 TTCACTCATGCGATATTG-CTGGATCAGGCTTTCACCCATTGTCCAAGATTCCCCAATGC 308 Query 83 TGCCTCCCGTAGGAGTCTGG 102 |||| ||| | |||||| || Sbjct 307 TGCC-CCCCTGGGAGTCCGG 289 >seq28519 Length=2267 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/119 (74%), Gaps = 13/119 (11%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 || || ||||| | |||| |||| ||||||| | |||| ||||||||||||| |||||| Sbjct 1383 CCCTCCTTCACTCTCGCGATATTG-CTGGATCGGCCTTTTGCCCATTGTCCAAGATTCCC 1441 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 | | | |||||||| ||||||||||| ||| |||| |||||||||| Sbjct 1442 C------------CATCAGAGTCTGGGACGTGTCTCAGTCCCATTGTGGCTGATCATCC 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1064858550400