Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq185669 150 6e-34 seq337457 113 2e-22 seq12633 98.7 4e-18 >seq185669 Length=737 Score = 150 bits (166), Expect = 6e-34 Identities = 167/220 (76%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 577 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 518 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 517 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 458 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 457 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 398 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | |||||||| |||||||||||||||||||| Sbjct 397 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCT 362 >seq337457 Length=467 Score = 113 bits (124), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 6/134 (4%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGG--TTTCAGGTACT--ATTTCACTCCCCGCCAGGGGT 503 || |||| |||||| ||||| | | |||||| || ||| ||||||||| ||||| Sbjct 308 CTTCGACTGATTGTT--CACATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGT 251 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 |||||||||||||||||||||||||||| |||||||||||| |||| || ||||| | Sbjct 250 TCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGTT 191 Query 564 TAACGGGTGGTCCC 577 || |||||| ||| Sbjct 190 TAGAGGGTGGCCCC 177 >seq12633 Length=3153 Score = 98.7 bits (108), Expect = 4e-18 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 23 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 82 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||| ||||| |||| | || | | |||||| | ||| ||||||| |||| Sbjct 83 CCCTAACCACAACTCATTCGCTGATTCTTCAACATCAGTCGGTTCGGACCTC 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1805491512320