Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq179349 107 5e-21 seq337457 98.7 2e-18 seq185669 78.8 2e-12 seq217371 73.4 1e-10 >seq179349 Length=757 Score = 107 bits (118), Expect = 5e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 328 GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATAT 387 ||||| |||||||||||||| |||| ||||||||||||||| |||||||||| || || Sbjct 756 GTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTGGCGGATGGTCCCGCCGGAT 697 Query 388 TCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| ||||| ||||| ||| ||||||| Sbjct 696 TCAGACAGGGTTTCACGTGCCCCGCCCTACTC 665 >seq337457 Length=467 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| | ||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 303 ACTGATTGTTCACATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 245 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| || |||| Sbjct 244 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGTTTAGAGG 185 Query 373 ATGGTCCCCC 382 ||| ||||| Sbjct 184 GTGGCCCCCC 175 >seq185669 Length=737 Score = 78.8 bits (86), Expect = 2e-12 Identities = 121/161 (75%), Gaps = 9/161 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 511 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 455 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 454 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 399 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| | ||||||| ||||||||| |||||||||| |||| Sbjct 398 GACAAT-CGCCCTATGAAGACTCGC-TTTCGCTACGGCTCC 360 >seq217371 Length=656 Score = 73.4 bits (80), Expect = 1e-10 Identities = 70/87 (80%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 || ||| || || ||||||||| | | || |||||||||||| ||||||||||||||| Sbjct 462 CGTTTTAAGCATATATTTCACTACTCACTT-GGGGTTCTTTTCACCTTTCCCTCACGGTG 404 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGT 357 ||| || |||| |||||| || |||| Sbjct 403 CTACTTTGCTATGGGTCAG-CATTAGT 378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1233328709120