Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq420953 125 1e-26 seq53078 100 6e-19 seq99089 98.7 2e-18 seq620807 95.1 2e-17 seq505354 91.5 3e-16 seq46833 78.8 2e-12 seq3989 78.8 2e-12 >seq420953 Length=382 Score = 125 bits (138), Expect = 1e-26 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27 ATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 86 |||| | || | |||||| | ||||||||||||||||||||||||||||||||||| | Sbjct 381 ATTGCGGAAAACTCCCCACCGTTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAG 322 Query 87 TGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCA 146 ||||| | ||| |||||| || ||||| |||| ||| |||||| |||||| ||| Sbjct 321 TGTGGTTGATCATCCTCTCGAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCG 262 Query 147 CCAACTACCTAATC 160 ||||||| |||||| Sbjct 261 CCAACTAGCTAATC 248 >seq53078 Length=1679 Score = 100 bits (110), Expect = 6e-19 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 || |||| | || || | ||||||||||||||| ||||||||| |||| | Sbjct 1458 CCTATTGCGAAAAATTCTCCACTGCTGCCTCCCATAGGAGTCT-----------CAGTTC 1410 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 || |||||| | ||| |||||| | || ||||| |||| ||| |||||| |||||| | Sbjct 1409 CAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCC 1350 Query 144 TCACCAACTACCTAATC 160 |||||||||| |||||| Sbjct 1349 TCACCAACTAGCTAATC 1333 >seq99089 Length=1166 Score = 98.7 bits (108), Expect = 2e-18 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 444 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 385 Query 67 GGGCCGTGTCTCAGTCCCA 85 ||||||||||||||||||| Sbjct 384 GGGCCGTGTCTCAGTCCCA 366 >seq620807 Length=227 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||| | ||||| | ||| |||||| || ||||| ||| Sbjct 227 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGTTGATCATCCTCTCGAACCAGCTACTGAT 168 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| |||||| |||||| ||| ||||||| |||||| Sbjct 167 CATCGCCTTGGTAAGCTATTGCCTCGCCAACTAGCTAATC 128 >seq505354 Length=310 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 55 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCT 114 |||||||| |||||||||||||||||||||| |||||| | ||| || || || ||| Sbjct 269 CCGTAGGATTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCT 210 Query 115 ACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 | ||| | |||||||| || ||| || |||||||||||||| Sbjct 209 AAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 165 >seq46833 Length=1791 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| | ||| | || || ||||| | |||||||| |||| Sbjct 1387 GGCATTGCTTCGTCAGGCTTTCGCATATTACGGAAAATTCCCCATTACTGCCTCCGGTAG 1446 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 || |||||| ||||||||||||||| |||| | | ||| Sbjct 1447 GATTCTGGGTCGTGTCTCAGTCCCAGTGTGTCTGATCA 1484 >seq3989 Length=4564 Score = 78.8 bits (86), Expect = 2e-12 Identities = 90/121 (74%), Gaps = 9/121 (7%) Strand=Plus/Minus Query 42 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||| || || ||||||||||||||| |||| |||||||| |||||||| || | || Sbjct 235 CCATTGTTGTCTCCCGTAGGAGTCTAGGCC--GTCTCAGTTCCAATGTGATCGACTATCC 178 Query 102 TCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCG 161 |||| | || |||| ||| |||||| || ||| | ||| |||||| ||||||| Sbjct 177 TCTC-------CAACTGATCATCGTCTTGGTAAGCCATTGTATCAGCAACTAGCTAATCG 125 Query 162 G 162 | Sbjct 124 G 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 991748858880