Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq414105 178 3e-42 seq2336 143 6e-32 seq930 122 2e-25 seq582522 114 3e-23 seq197856 111 4e-22 >seq414105 Length=389 Score = 178 bits (196), Expect = 3e-42 Identities = 177/226 (78%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| |||| |||| Sbjct 28 ACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCC 83 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| || |||| | || || ||||||||||||||||||||||| |||| | Sbjct 84 CGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGT 142 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||||| Sbjct 143 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGC 202 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 203 GGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 248 >seq2336 Length=5236 Score = 143 bits (158), Expect = 6e-32 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||||||||||||| |||| |||||||||| |||||||||| |||||||| Sbjct 232 CTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTCCTTCCAAGCCCACCTCCTG 173 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| ||| ||| |||||| ||||| ||| | ||||||| ||||||| | Sbjct 172 GTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTAC 113 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||||| Sbjct 112 GATCTGGGCTGTTTCCCTCTCG 91 >seq930 Length=6480 Score = 122 bits (134), Expect = 2e-25 Identities = 143/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || || | ||||| | ||||| |||| || ||| || ||||| | Sbjct 3933 GCTTCGGTGCATCACCTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAAT 3877 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||| ||| | |||| ||||||| ||||||||||||| |||||||| ||||| || Sbjct 3876 GAGCTAGTACACTTTCTTCAAAGGATGACTGCTTCCAAGCCCACCTCCTGCTTGTCATCG 3817 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||| | ||||||| | ||||||| | Sbjct 3816 CTCAATCACTTCCTTTTCCACTAAGTGATTGCTTAGAGACCTTAGCGTACAATCTGGGTT 3757 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 3756 GTTTCCCTCTCG 3745 >seq582522 Length=252 Score = 114 bits (126), Expect = 3e-23 Identities = 148/199 (74%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAAC--TTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGAC 264 ||| |||||||| ||||| |||| |||| | |||||| || ||| || ||| Sbjct 234 CCATAGCTTCGGT--ATAACGCTTAATGCCCGTTT-ATTATCCATGCCCGATCGCTCGAC 178 Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||| ||||||||||||| || || ||||||||||||||||||| |||| | ||| Sbjct 177 TAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGT 118 Query 324 CTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 || |||| || || || | | ||| || | || ||| |||||||||||| | Sbjct 117 CTGTGCAATCGGACCTCGTTAGTTCAACTTAGCGTTAATTTGGGGACCTTAGCTGATGGT 58 Query 382 CTGGGCTGTTTCCCTCTCG 400 ||||| | ||||||||||| Sbjct 57 CTGGGTTCTTTCCCTCTCG 39 >seq197856 Length=704 Score = 111 bits (122), Expect = 4e-22 Identities = 138/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGC 272 |||||| | || |||| |||||| ||||| | || || || || ||||| | ||| Sbjct 318 CTTCGG-GAATCACTTGAGCCCCAACACATTTTTGGTGCCATATAGCTAGACCACTAAGC 376 Query 273 TATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAAC 332 |||||| | |||| ||||||||||||||||||||| ||||||| ||| | || Sbjct 377 TATTACACTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTAGCATTGCTCG 436 Query 333 TCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392 ||| |||||| ||||||||| | ||||| | ||||||| | |||| || || || Sbjct 437 ATCACTTCCTTTTCCACTGAGTGATTGCTTAGTGACCTTAGCATACAATCTTGGATGCTT 496 Query 393 CCCTCTCG 400 |||||||| Sbjct 497 CCCTCTCG 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1169755064320