Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq346209 228 1e-57 seq13270 82.4 1e-13 seq46833 78.8 2e-12 >seq346209 Length=457 Score = 228 bits (252), Expect = 1e-57 Identities = 228/288 (79%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| || |||||||||| | ||| |||| |||||||||||||||||| Sbjct 128 CCCACGCTTTCGTGCTTCAGCGTCAG-TGTTGTCCCAGATGGCCGCCTTCGCCACTGGTG 186 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||| |||| ||||||||| |||||||| |||||| ||||||||| | ||||||| | | Sbjct 187 TTCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTGACCTCTCCTGGA 246 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGA 178 ||||| | |||| ||||| ||| | | ||| ||||||| | | |||||| ||||| Sbjct 247 TTCAAGCGATGCAGTCTCAAAGGCA-GTTCTGGAGTTGAGCTCCAGGCTTTCACCTCTGA 305 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAAT-CCGGATAACGCTTGCCACCT 237 ||| | |||||||| || |||||| |||| ||| | ||| | ||| |||||| || Sbjct 306 CTTACAAAGCCGCCTACGTGCGCTTTACGCCCAGTAATTCCCGAAGAACACTTGCC-CCC 364 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 365 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 412 >seq13270 Length=3098 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| ||| || | |||||||||||||||| ||| || ||||| Sbjct 3089 CCACCTACAGACGCTTTACGCCCTATCATTCCGGATAACGCTTGCATCCTCTGTCTTACC 3030 Query 248 GCGGCTGCTGGCACGTAGTTAGC 270 |||||||||||||| ||||||| Sbjct 3029 GCGGCTGCTGGCACAGAGTTAGC 3007 >seq46833 Length=1791 Score = 78.8 bits (86), Expect = 2e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 209 CCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTA 268 ||||| | ||| |||||||||||| ||| || ||||||||| ||||||||| || ||| Sbjct 1244 CCAATCATTCCAGATAACGCTTGCATCCTCTGTCTTACCGCGGTTGCTGGCACATAATTA 1303 Query 269 GCCGTGGCTTATTCCTCA 286 ||| |||||||||||| Sbjct 1304 GCCAATGCTTATTCCTCA 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 823451240780