Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq287326 235 9e-60 seq80722 154 2e-35 seq265201 123 4e-26 seq142418 107 3e-21 seq190680 87.8 3e-15 seq62306 78.8 1e-12 seq34932 73.4 6e-11 >seq287326 Length=531 Score = 235 bits (260), Expect = 9e-60 Identities = 184/220 (84%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 || ||| ||||||||||||||||| |||||| |||| | ||||| | | ||||||| Sbjct 240 GGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCATTCCGTATATAGCTACTCTGCTATGC 181 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||||||| ||||| | | |||||||| | |||||||||||||||||||||||| ||| Sbjct 180 CCTTGGCAGGACAACAGATCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACTAGGGA 121 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| |||| |||| ||||||| |||||| | |||||||||||||||||||| ||||||| Sbjct 120 CAGATCCTGTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTT 61 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||||||||| ||| ||| || |||||| ||||||||||| Sbjct 60 CTGAACCCAACTCACGTACCGCTTTAAATGGCGAACAGCC 21 >seq80722 Length=1328 Score = 154 bits (170), Expect = 2e-35 Identities = 127/155 (82%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| Sbjct 858 CTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACATCGGATATGGACCGAACTGTCTCA 917 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||| |||| |||||||||| ||| || ||||||||||||||||||||||||||| || Sbjct 918 CGACATTCTAAACCCAGCTCACGTACCGTATTAATGGGCGAACAGCCCAACCCTTGGAAC 977 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| ||||| | || |||||||||||| Sbjct 978 CACCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 1012 >seq265201 Length=565 Score = 123 bits (136), Expect = 4e-26 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 168 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 109 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 108 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 49 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCG 170 | ||| || ||||||||| || |||||||| |||||| |||||| Sbjct 48 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCG 1 >seq142418 Length=898 Score = 107 bits (118), Expect = 3e-21 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 91 CAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT-TTCCT-- 147 || || || || || ||| ||||| |||||||| || ||||||| || | |||| Sbjct 494 CATAGATTGGTGCAACCCAGTCCTTTCGTACTAGGGTTGGCTCCTCGCAGTTCTTCCATT 435 Query 148 -ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGC 206 || || ||| |||||| ||||||||||||| |||| ||| |||||| || ||| | Sbjct 434 AACACCAACGGTAGATAGGAACCGAACTGTCTCACGACTTTCCAAACCCAACTGACGTAC 375 Query 207 CTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 | |||| || |||||||| || ||||||||| |||| ||||| Sbjct 374 CACTTTCATCGGCGAACAACCAAACCCTTGGAACCTTCTTCA 333 >seq190680 Length=723 Score = 87.8 bits (96), Expect = 3e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | |||||||||||||||||||||| |||| ||| Sbjct 498 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCTTTGGAACCA 557 Query 243 ACTTCAGCCCCAG 255 || |||| |||| Sbjct 558 CCTACAGCTCCAG 570 >seq62306 Length=1538 Score = 78.8 bits (86), Expect = 1e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG 249 ||||||||||||||| || | || | | |||||| |||||||||||| ||| || ||| Sbjct 1444 GAACCCAGCTCGCGTACCGCATTGACAGACGAACAACCCAACCCTTGGAACCACCTACAG 1503 Query 250 CCCCAGGATGAGACGAGCCGACATCG 275 | ||||| | || |||||||||||| Sbjct 1504 CTCCAGGTGGCGAAGAGCCGACATCG 1529 >seq34932 Length=2063 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||| |||| ||| || ||| ||||||||||||| ||| | ||| | | | ||||||| | Sbjct 264 CCGTACTGACTCACGTCGTACTGAACCCAGCTCACGTAGCACTTCACTAGACGAACAGTC 323 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| | || ||||| | |||||| | |||||||||||| Sbjct 324 TAACCCTTACAAGCTTCTTCACCTGTAGGATGTGCTGAGCCGACATCG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775761014480