Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq420953 145 2e-32 seq53078 123 6e-26 seq99089 113 1e-22 seq620807 111 4e-22 seq46833 107 5e-21 seq505354 95.1 3e-17 seq334432 87.8 4e-15 seq105233 87.8 4e-15 seq337864 82.4 2e-13 seq410458 78.8 2e-12 >seq420953 Length=382 Score = 145 bits (160), Expect = 2e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 |||| | || | ||||||| | |||||||||||||||||||| |||||||||||| | || Sbjct 381 ATTGCGGAAAACTCCCCACCGTTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAG 322 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 ||||| || |||||||||| |||||||| |||| |||||| ||| || ||| || || Sbjct 321 TGTGGTTGATCATCCTCTCGAACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCG 262 Query 182 CCAACTAGCTAATCC 196 ||||||||||||||| Sbjct 261 CCAACTAGCTAATCC 247 >seq53078 Length=1679 Score = 123 bits (136), Expect = 6e-26 Identities = 109/138 (79%), Gaps = 11/138 (8%) Strand=Plus/Minus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 117 ||| |||| | || |||| ||||||||||||||| ||||||||| ||||| Sbjct 1459 GCCTATTGCGAAAAATTCTCCACTGCTGCCTCCCATAGGAGTCT-----------CAGTT 1411 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTAC 177 |||||||||||| |||||||||| ||||||||| |||| |||||| ||| || ||| | Sbjct 1410 CCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGC 1351 Query 178 CCCGCCAACTAGCTAATC 195 | | |||||||||||||| Sbjct 1350 CTCACCAACTAGCTAATC 1333 >seq99089 Length=1166 Score = 113 bits (124), Expect = 1e-22 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 |||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||||| Sbjct 463 TCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTG 404 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 ||||| ||||| |||||| || |||||||||||| ||||| Sbjct 403 CTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGT 364 >seq620807 Length=227 Score = 111 bits (122), Expect = 4e-22 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 155 |||||||| |||||||||||| | ||||||| || |||||||||| |||||||| ||| Sbjct 227 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGTTGATCATCCTCTCGAACCAGCTACTGAT 168 Query 156 CGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 | |||||| ||| || ||| || ||||||||||||||||| Sbjct 167 CATCGCCTTGGTAAGCTATTGCCTCGCCAACTAGCTAATCC 127 >seq46833 Length=1791 Score = 107 bits (118), Expect = 5e-21 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 || || |||||||| | | ||| |||||| ||| | |||||||| ||| ||| | || Sbjct 1362 ACTCGTAGGCCTTCCACCTCCACACGGCATTGCTTCGTCAGGCTTTCGCATATTACGGAA 1421 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||| | |||||||| |||||| ||||| ||||||||||| |||||||| ||| Sbjct 1422 AATTCCCCATTACTGCCTCCGGTAGGATTCTGGGTCGTGTCTCAGTCCCAGTGTGTCTGA 1481 Query 131 TCAT 134 |||| Sbjct 1482 TCAT 1485 >seq505354 Length=310 Score = 95.1 bits (104), Expect = 3e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 90 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149 |||||||| ||||| |||||||||||| |||||||||||| |||||| ||||||||| Sbjct 269 CCGTAGGATTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCT 210 Query 150 AGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | | ||| | | || ||| ||| ||||| ||||||| ||||| Sbjct 209 AAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 165 >seq334432 Length=471 Score = 87.8 bits (96), Expect = 4e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 |||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||||| Sbjct 411 TCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTG 352 Query 83 CTGCCTCCCGTAGGAGTCTGG 103 ||||| ||||| |||||| || Sbjct 351 CTGCCCCCCGTGGGAGTCCGG 331 >seq105233 Length=1120 Score = 87.8 bits (96), Expect = 4e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 |||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||||| Sbjct 61 TCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTG 120 Query 83 CTGCCTCCCGTAGGAGTCTGG 103 ||||| ||||| |||||| || Sbjct 121 CTGCCCCCCGTGGGAGTCCGG 141 >seq337864 Length=467 Score = 82.4 bits (90), Expect = 2e-13 Identities = 102/139 (73%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 29 TACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCT 88 |||| | || || | || ||| ||||| | ||||||| ||| |||| ||||||| ||| Sbjct 363 TACAAGTGGTATTGTTGGATCGGGCTTTTGTCCATTGTCCAAAATTCTCCACTGCAGCC- 305 Query 89 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGC 148 || | | |||| | |||||||||| ||||||||||| || |||||| ||| || | Sbjct 304 -CCATGGAAGTCCGAGCCGTGTCTCATTTCCAGTGTGGGTGATCATCCGAAAAGAACAAC 246 Query 149 TAGGGATCGTCGCCTAGGT 167 || | ||| | | || ||| Sbjct 245 TAAGCATCATTGGCTTGGT 227 >seq410458 Length=392 Score = 78.8 bits (86), Expect = 2e-12 Identities = 82/107 (77%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 29 TACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCT 88 |||| | || || | || ||| ||||| | ||||||| ||| |||| ||||||| ||| Sbjct 194 TACAAGTGGTATTGTTGGATCGGGCTTTTGTCCATTGTCCAAAATTCTCCACTGCAGCC- 252 Query 89 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 || | | |||| | |||||||||| ||||||||||| || ||||| Sbjct 253 -CCATGGAAGTCCGAGCCGTGTCTCATTTCCAGTGTGGGTGATCATC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1214256615680