Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq46833 152 2e-34 seq53078 131 5e-28 seq420953 129 2e-27 seq346209 123 7e-26 seq99089 105 2e-20 seq28519 98.7 3e-18 seq620807 95.1 4e-17 seq228218 89.7 2e-15 seq13270 87.8 5e-15 seq376558 86.0 2e-14 seq334432 86.0 2e-14 seq105233 86.0 2e-14 seq3989 84.2 7e-14 seq505354 82.4 2e-13 >seq46833 Length=1791 Score = 152 bits (168), Expect = 2e-34 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 ||||| | |||| ||| ||||||||||| ||| | |||||| |||||||| | |||||| Sbjct 1484 TGATCAGACACACTGGGACTGAGACACGACCCAGAATCCTACCGGAGGCAGTAATGGGGA 1425 Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG 348 || || | ||| || ||||||||| | ||||| |||| ||| | |||||||| || Sbjct 1424 ATTTTCCGTAATATGCGAAAGCCTGACGAAGCAATGCCGTGTGGAGGTGGAAGGCCTACG 1365 Query 349 GGTCGTAAAGCTCTGTCCTCAAGGA--AGATAATGACGGTACTTGAGGAGGAAGCCCCGG 406 ||| | || ||| | ||| || | | |||||| ||| |||||| |||| || Sbjct 1364 AGTCTTCAACTTCTTTTCTCGGAGAACAAACAATGACAGTATATGAGGAATAAGCATTGG 1305 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||| || ||||||||| ||||||||| || ||| || ||||||||| ||||| | || Sbjct 1304 CTAATTATGTGCCAGCAACCGCGGTAAGACAGAGGATGCAAGCGTTATCTGGAATGATTG 1245 Query 467 G 467 | Sbjct 1244 G 1244 >seq53078 Length=1679 Score = 131 bits (144), Expect = 5e-28 Identities = 113/142 (80%), Gaps = 11/142 (8%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||||||||||||||||||| ||| || |||||||||||||| |||||||||| | | | Sbjct 1329 GTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCG 1388 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| |||||||||| ||||||| |||||||||||| Sbjct 1389 AGAGGATGATCAGCCACACTGGAACTGAG-----------ACTCCTATGGGAGGCAGCAG 1437 Query 283 TGGGGAATATTGCACAATGGGC 304 ||| |||| || | |||| ||| Sbjct 1438 TGGAGAATTTTTCGCAATAGGC 1459 >seq420953 Length=382 Score = 129 bits (142), Expect = 2e-27 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||||||||||| ||| || |||||||||||||| |||||||||| | ||||| Sbjct 248 GATTAGCTAGTTGGCGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTTCGAGAG 307 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| ||||| | | |||||||||||| ||| |||||||||||||||| | ||||| Sbjct 308 GATGATCAACCACACTAGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAACGGTGGG 367 Query 287 GAATATTGCACAAT 300 || | || | |||| Sbjct 368 GAGTTTTCCGCAAT 381 >seq346209 Length=457 Score = 123 bits (136), Expect = 7e-26 Identities = 121/151 (80%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 353 GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 |||||||||| || || || | || ||||| | ||| ||||| |||||||||||||| Sbjct 452 GTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAA 393 Query 411 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTT-ATCCGGAATTACTGGGG 469 || |||||||||||||||||||| ||| |||||| || ||| || ||||||||| ||| Sbjct 392 CTCCGTGCCAGCAGCCGCGGTAAGACG-GGGGGGCAAGTGTTCTTCGGGAATTACT-GGG 335 Query 470 CGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||| | |||||| || || |||||| Sbjct 334 CGTAAAGCGCACGTAGGCGGCTTTGTAAGTC 304 >seq99089 Length=1166 Score = 105 bits (116), Expect = 2e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 242 TGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATG 301 ||| |||||||||||| || ||||| ||||| |||||||||||||||| ||| |||||| Sbjct 366 TGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATG 425 Query 302 GGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||| |||||| ||| |||||| |||||||| || || Sbjct 426 GGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGA 463 >seq28519 Length=2267 Score = 98.7 bits (108), Expect = 3e-18 Identities = 157/223 (70%), Gaps = 17/223 (8%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| ||||||||||| ||| |||| | ||| Sbjct 1488 GGATGATCAGCCACAATGGGACTGAGACACGTCCCAGACTCTGATGGG------------ 1441 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--C 343 ||||| ||| |||||||||||||| | ||| |||||| |||| ||| || | ||| Sbjct 1440 GGAATCTTGGACAATGGGCAAAAGGCCGATCCAGCAATATCGCGAGAGTGAAGGAGGGAA 1381 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAG-GA-AGATAATGACGGTACTTGAGGAGGAAGC 401 | | | | |||||||||| || | || || ||| ||||| | | ||||| ||||| Sbjct 1380 ATGCTGCTTGTAAAGCTCTTTCTTTGAGTGAGCGATCATGACAAGATTCGAGGAAGAAGC 1321 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 ||| ||||||| |||||||||| |||| | || |||||| Sbjct 1320 CCCAGCTAACTCTACGCCAGCAGCCACGGTGACGCG-AGGGGG 1279 >seq620807 Length=227 Score = 95.1 bits (104), Expect = 4e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||||||||||| ||| || |||||||||||||| |||||||||| | ||||| Sbjct 128 GATTAGCTAGTTGGCGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTTCGAGAG 187 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTC 266 | ||||| ||||| | | |||||||||||| ||| |||| Sbjct 188 GATGATCAACCACACTAGGACTGAGACACGGCCCAGACTC 227 >seq228218 Length=633 Score = 89.7 bits (98), Expect = 2e-15 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377 ||||| |||||||| | |||||||| || ||||| || ||| | ||| ||||| Sbjct 632 AGCAATGCCGCGTGGAGGTGGAAGGCCTACGAGTCGTCAACTTCTTTTCTCGGAGAAGAA 573 Query 378 A--ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATA 435 | ||||||||| |||||| |||| | ||||||| ||||||||||||||||||| | Sbjct 572 ACAATGACGGTATCTGAGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCGGTAAGA 513 Query 436 CGTAGGGGGCTAGCGT 451 | ||| || ||||| Sbjct 512 CAGAGGATGCAAGCGT 497 >seq13270 Length=3098 Score = 87.8 bits (96), Expect = 5e-15 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 465 ||||||| ||||||||||||||||||| || ||| || ||||||||||||||| | | Sbjct 3007 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGA-T 3065 Query 466 GGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 |||||||||| || |||||||| || | ||| Sbjct 3066 AGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAG 3098 >seq376558 Length=425 Score = 86.0 bits (94), Expect = 2e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| || || ||||| || |||| |||||||||| || Sbjct 85 CGCGTCTGATTAGCTAGTTGGTGTGGCAATAACTTACTAAAGCGATGATCAGTAGCTGAT 26 Query 220 CTGAGAGGGTGATCGGCCACATTGG 244 | |||||| ||||| |||||| ||| Sbjct 25 CCGAGAGGATGATCAGCCACACTGG 1 >seq334432 Length=471 Score = 86.0 bits (94), Expect = 2e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||||| |||||||||||||||| ||| ||||||||| |||||| ||| |||||| Sbjct 335 ACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAA 394 Query 323 CGCCGCGTGAGCGATGA 339 |||||||| || || Sbjct 395 TATCGCGTGAGTGAAGA 411 >seq105233 Length=1120 Score = 86.0 bits (94), Expect = 2e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||||| |||||||||||||||| ||| ||||||||| |||||| ||| |||||| Sbjct 137 ACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAA 78 Query 323 CGCCGCGTGAGCGATGA 339 |||||||| || || Sbjct 77 TATCGCGTGAGTGAAGA 61 >seq3989 Length=4564 Score = 84.2 bits (92), Expect = 7e-14 Identities = 92/122 (75%), Gaps = 9/122 (7%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 || ||||||||||||| | | || ||||||||||| ||| ||||||| | || Sbjct 123 TCCGATTAGCTAGTTGCTGATACAATGGCTTACCAAGACGATGATCAGTTG-------GA 175 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| | ||| ||||||||||||||| |||| | | ||||||||||||| || || | Sbjct 176 GAGGATAGTCGATCACATTGGAACTGAG--ACGGCCTAGACTCCTACGGGAGACAACAAT 233 Query 284 GG 285 || Sbjct 234 GG 235 >seq505354 Length=310 Score = 82.4 bits (90), Expect = 2e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 165 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 224 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGG 272 ||||| |||||| ||| |||||||||||| ||| | |||||||| Sbjct 225 ATGATCAGCCACACTGGGACTGAGACACGGCCCAGAATCCTACGG 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1487623288320