Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq346209 367 3e-99 seq367454 113 1e-22 seq493689 111 4e-22 seq13270 89.7 1e-15 seq313692 75.2 3e-11 >seq346209 Length=457 Score = 367 bits (406), Expect = 3e-99 Identities = 331/410 (81%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 416 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGG-GGGGGCA 358 Query 62 AGCGTTATCCGG-AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || ||| | ||| ||||||||||||||||| | |||||| || || |||||||||||| Sbjct 357 AGTGTTCTTCGGGAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTCAGAGGT 298 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||||| || ||||||| || | ||||| ||||| |||||| ||| || | |||||| Sbjct 297 GAAAGCCTGGAGCTCAACTCCAGAACTGCCTTTGAGACTGCATCGCTTGAATCCAGGAGA 238 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||| Sbjct 237 GGTCAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGG 178 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||||||||| |||| |||||| |||| || |||||||||||||||||||||| Sbjct 177 CGAAGGCGGCCATCTGGGACAACACTGACGCTGAAGCACGAAAGCGTGGGGAGCAAACAG 118 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCA--T 358 |||||||||||||||||||||||||| ||||||||| ||| | ||| || | || | Sbjct 117 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGATGT-TGGTCTCAACT 59 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 58 CGGAGAT-CAGTGTCGAAGCTAACGCGTTAAGTTCGCCGCCTGGGGAGTA 10 >seq367454 Length=434 Score = 113 bits (124), Expect = 1e-22 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||| | |||||| |||||||| ||||||| | | ||||| ||| || ||||| | Sbjct 236 AATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAATGCCAAAAGCAAAGGCAG 295 Query 250 CTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || |||| || || | ||| ||| | ||||||| |||||||| || |||||||||| Sbjct 296 CTCTCTGGGTCTCTACC-GACGCTGGAGTGCGAAAGCATGGGGAGCGAATAGGATTAGAT 354 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||| ||||||||| |||| Sbjct 355 ACCCTGGTAGTCCATGCCGTAAACAATGA 383 >seq493689 Length=320 Score = 111 bits (122), Expect = 4e-22 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 || |||||||| ||||||| | | ||||| ||| |||||||| ||| |||| Sbjct 187 AGGGGTGAAATCCGTAGATCTACGAAGGAATGCCAAAAGCGAAGGCAGCTCTCTGGGTCC 128 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 || ||| ||| || ||||||| ||||||| |||||||||||||||||||||||||| Sbjct 127 CTACCGACGCTGGGGTGCGAAAGCATGGGGAGTGAACAGGATTAGATACCCTGGTAGTCC 68 Query 322 ACGCCGTAAACGATGA 337 | ||||||||| |||| Sbjct 67 ATGCCGTAAACAATGA 52 >seq13270 Length=3098 Score = 89.7 bits (98), Expect = 1e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 21 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 80 ||||||| ||||||||||||||||||| || ||| || ||||||||||||||| | Sbjct 3007 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATA 3066 Query 81 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 112 |||||||||| || |||||||| || | ||| Sbjct 3067 GGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAG 3098 >seq313692 Length=496 Score = 75.2 bits (82), Expect = 3e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 267 GACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC 326 ||| ||| || | ||||| ||||||||||||| |||||||||||| |||||||| ||| Sbjct 56 GACGCTGGGGTGCAAAAGCATGGGGAGCAAACATGATTAGATACCCCAGTAGTCCATGCC 115 Query 327 GTAAACGATGA 337 |||| ||||| Sbjct 116 ATAAATGATGA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1195184522240