Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq469 320 3e-85 seq131250 120 6e-25 seq514002 98.7 2e-18 >seq469 Length=7400 Score = 320 bits (354), Expect = 3e-85 Identities = 227/259 (88%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| Sbjct 5346 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 5287 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 5286 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 5227 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 5226 GCCTTGGCCGACAGGCCCGGGTAATCTTGAGAAATTTCATCGTGATGGGGATAGATCATT 5167 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 5166 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 5107 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 5106 TACGTCCCTGCCCTTTGTA 5088 >seq131250 Length=955 Score = 120 bits (132), Expect = 6e-25 Identities = 115/149 (77%), Gaps = 10/149 (7%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||| |||||||||||||||||||| |||||||||||||||||||| |||||| | || Sbjct 139 GGAAGGTTGAGGCAATAACAGGTCTGCGATGCCCTTAGATGTTCTGGACCGCACACATGC 80 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 | | |||||||| || ||||||||| ||| | ||||||||||| || Sbjct 79 T----------ATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGAGAA 30 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGC 251 | | ||||| |||||||||| |||||| Sbjct 29 ATTTCATCGTGATGGGGATAGATCATTGC 1 >seq514002 Length=303 Score = 98.7 bits (108), Expect = 2e-18 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | ||||||||| |||| | | |||||||||| || |||||||||| ||||| Sbjct 212 GGGATTGGGGATTGCAATTGTTGCCCATGAACGAGGAATTCCCAGTAAGCGCGATTCATC 271 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | |||| ||||||||||||||||||||||| Sbjct 272 ATATCGCGCTGATTACGTCCCTGCCCTTTGTA 303 Score = 73.4 bits (80), Expect = 7e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 120 ACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||||||||||||||||||| |||| ||||||||||| |||||| || Sbjct 1 ACAGGTCTGTGATGCCCTTAGATATTCTAGGCCGCACGCGTGCTACAATG 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940889943040