Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq582522 268 3e-69 seq185669 123 8e-26 seq414105 122 3e-25 seq12633 87.8 6e-15 seq437376 75.2 4e-11 >seq582522 Length=252 Score = 268 bits (296), Expect = 3e-69 Identities = 192/221 (87%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 ||||||| |||||||||||||||| || |||||||| ||||| || ||| |||||||| Sbjct 9 AGTGAGGCTATGGGTGCTAAGGTCCATGGCCGAGAGGGAAAGAACCCAGACCATCAGCTA 68 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||| ||| |||| | |||||||| ||||||||| ||| |||||| ||||||||||||| Sbjct 69 AGGTCCCCAAATTAACGCTAAGTTGAACTAACGAGGTCCGATTGCACAGACAGCTAGGAT 128 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 129 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGCGATC 188 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 |||| |||||||||| |||| |||||| | ||||||||| Sbjct 189 GGGCATGGATAATAAACGGGCATTAAGCGTTATACCGAAGC 229 >seq185669 Length=737 Score = 123 bits (136), Expect = 8e-26 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 376 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 435 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 436 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 495 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 496 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 555 Query 182 CCGAAA 187 |||||| Sbjct 556 CCGAAA 561 >seq414105 Length=389 Score = 122 bits (134), Expect = 3e-25 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 248 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 191 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 190 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 132 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| | ||| || || | |||| |||| Sbjct 131 AGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGA 73 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 72 TCTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 30 >seq12633 Length=3153 Score = 87.8 bits (96), Expect = 6e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||| ||| || | ||||| ||||| ||||||||||| | Sbjct 134 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGAATGAGTTGTGGTTAGGGGTGAAATG 75 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | | ||| || |||||||||||| |||||| Sbjct 74 CCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 39 >seq437376 Length=367 Score = 75.2 bits (82), Expect = 4e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||||||| | Sbjct 263 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 322 Query 152 C 152 | Sbjct 323 C 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1678344222720