Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq295735 188 1e-45 seq614876 100 5e-19 seq96058 91.5 3e-16 seq179349 84.2 4e-14 seq201235 78.8 2e-12 >seq295735 Length=520 Score = 188 bits (208), Expect = 1e-45 Identities = 189/241 (78%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| | Sbjct 241 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 182 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || ||||||| |||| || |||||||||| || ||||||||||||||||| | Sbjct 181 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 123 Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | ||| || || | ||| ||||||||||| | |||||||| || ||||||| Sbjct 122 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGA 65 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 || ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||| Sbjct 64 AATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGA 5 Query 238 A 238 | Sbjct 4 A 4 >seq614876 Length=231 Score = 100 bits (110), Expect = 5e-19 Identities = 155/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Plus Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGC-TGCGGGGAGTGAGCAAACACACTTTG 89 || ||| ||||||||||| | |||||||||| || ||| | ||| || || |||| Sbjct 13 AGCCGAAGAAGGACGTAGCAATCTGCGATAAGCCTGGGGGAACTGAT-AAGCAAGTTTTG 71 Query 90 ATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG------------GTCATTGCAT 137 ||||| | | ||||||||||||||||| || || || | | | Sbjct 72 ATCCGAGGGTGTCCGAATGGGGAAACCCCGCTGGGCGGCGTGCCGACCTAGTGACTCCCG 131 Query 138 GCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAG 196 ||||||| ||||| | | || ||||| || ||| |||||||||| |||| | ||| Sbjct 132 CCTGAATATATAGGGCGGGTAGAGGGAACGTGGGGAAGTGAAACATCTCAGTACCCACAG 191 Query 197 GAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 ||| ||||| |||||| |||||| |||||||||||||| Sbjct 192 GAAGAGAAAGCAACCGCGATTCCGTTAGTAGTGGCGAGCG 231 >seq96058 Length=1191 Score = 91.5 bits (100), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 10/190 (5%) Strand=Plus/Plus Query 56 CGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAAC 115 ||| | ||| |||||||| | ||| | | | ||||| |||||||| ||| || ||| Sbjct 865 CGAAATGCTTCGGGGAGTT-GAAAATAAGCATAGATCCAAAGATTTCCAAATAGGTCAAC 923 Query 116 CCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAAC 174 | ||| | ||| |||||||| ||| | | |||| || ||| ||||||| Sbjct 924 CT-----TTTAA---ACTGCCTGCTGAATCCATGAGCAGGCAAGAGATAACCTGGCGAAC 975 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||||| ||||||||||| | | | |||| || | ||| |||||| Sbjct 976 TGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCGAAAGTGATTTCCGTAATAGCGGCGAG 1035 Query 235 CGAAATGGGA 244 |||||||||| Sbjct 1036 CGAAATGGGA 1045 >seq179349 Length=757 Score = 84.2 bits (92), Expect = 4e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 160 GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCC 219 || ||| || |||||||||||||||||||| | |||| |||||| ||| | |||||| Sbjct 434 GCAAACCCGCTGAACTGAAACATCTAAGTAGGCGGAGGAGAAGAAAACAAAAGTGATTCC 493 Query 220 CAAAGTAGTGGCGAGCGAAATGGGATGAGCC 250 ||||||||||||||||| |||| |||| Sbjct 494 GTAAGTAGTGGCGAGCGAACGCGGATTAGCC 524 Score = 82.4 bits (90), Expect = 1e-13 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| |||||||| ||||||||| || ||||| | Sbjct 218 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGAAA 277 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| | |||||| || || | ||||||||| ||| ||||||||||| ||||| Sbjct 278 AGCCGTGGGGAG-CTGCGAATAAGCTTTGATCCATGGATCTCCGAATGGGGCAACCC 333 >seq201235 Length=695 Score = 78.8 bits (86), Expect = 2e-12 Identities = 83/108 (77%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 138 GCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAG 196 ||||||| ||| ||| |||| || || ||||||||||||| ||| |||||| || Sbjct 629 GCTGAATCCATGAGTAGGCAAGAGACCACCTGGCGAACTGAAACGTCTTAGTAGCCAGAG 570 Query 197 GAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||||||||| ||| | ||||||| ||||| | ||| ||||||||| Sbjct 569 GAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGATGAGGGAAATGGGA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912281802880