Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq469 711 0.0 seq276276 118 3e-24 seq359013 78.8 3e-12 seq70581 77.0 1e-11 seq33356 77.0 1e-11 >seq469 Length=7400 Score = 711 bits (788), Expect = 0.0 Identities = 481/535 (90%), Gaps = 8/535 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1619 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1678 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1679 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 1738 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| || || |||| |||| || || || | || | ||||| | Sbjct 1739 GGCCCGGTAAAACCGGGCCTTGGAGCCAAAAGGAGG--GGACTTGCCCCGCTTCCGACCC 1796 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAAACGGCTCC 240 | || ||||||||| |||| ||| |||||||||||||||||||||| | || |||||| Sbjct 1797 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGTAAAGGCTCC 1856 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 CACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 1916 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1917 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG 1976 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1977 TAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 2036 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2037 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 2096 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2097 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 2151 >seq276276 Length=548 Score = 118 bits (130), Expect = 3e-24 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 478 CTTTTACTCTACGAGAGGTTTCTGTCCTCTCTGAGCTAACCTTAGGACACCTGCGTTATT 419 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||| ||||||||| |||||||||| ||||||| |||| || Sbjct 418 CTTTAACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCCTC 369 Score = 96.9 bits (106), Expect = 1e-17 Identities = 106/141 (75%), Gaps = 15/141 (11%) Strand=Plus/Minus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC------TTGCG---CC 229 || || || | |||||| ||||||| | ||||| |||||||||| |||| || Sbjct 141 TTAATCGAGTCAGTAAAGAAACGATGAAGGTAGAGGTATTTCACCGTCGATTGCAAATCC 82 Query 230 GAAACGG------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| ||||| ||||||||||||| |||| ||| ||||||| ||| || || Sbjct 81 GAAAACTTACAATCTCCCTCTTATTCTACACCCCTCATGTCTCTTCACAATGTCAGATTA 22 Query 284 GAGTCAAGCTCAACAGGGTCT 304 ||||||||||||||||||||| Sbjct 21 GAGTCAAGCTCAACAGGGTCT 1 >seq359013 Length=443 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||| |||||| ||| ||| ||| ||| ||| ||| |||| ||||||||| || Sbjct 5 TCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 64 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||| | ||||||| |||||||||||| | |||| Sbjct 65 AGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 97 >seq70581 Length=1435 Score = 77.0 bits (84), Expect = 1e-11 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||||||||||||||||||||| |||||| | || || | | | ||||||| | Sbjct 1 TCATAGTTACTCCCGCCGTTTACTTGCGCTTACGGGCATCTCAACCCGATAACATTCAAA 60 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| ||||||| Sbjct 61 GCACTGGGCAGAAATCACAAACTGTCAACA 90 >seq33356 Length=2108 Score = 77.0 bits (84), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 12/151 (8%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT- 338 || |||||||||||||| ||| ||||||| || | || | ||||||| ||||| Sbjct 1738 ACAAGAGTCAAGCTCAATAGGTTCTTCTT---CCATGGGTTGCACCAAGCC---TCCCTC 1685 Query 339 --TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC--GTTAATCCATT 394 ||| ||| |||| ||| | || |||| | | |||| ||||||| |||||| ||| Sbjct 1684 ACTGGTTGTCGTTTTGCTTGGTATTAGACA-TGTGAGTGAGAATCTCATGTTAATATATT 1626 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||| |||||||| |||||| | || ||| Sbjct 1625 CATGTTTGTCACTAAATAGATGCCAAGTCAT 1595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1624306624640